Plant FIBer expression Database

Lus10010220 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G67240 54 / 8e-09 SDN3 small RNA degrading nuclease 3 (.1.2)
AT3G50100 49 / 5e-07 SDN1 small RNA degrading nuclease 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019321
[exp]
177 / 2e-53 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2)
Lus10011504
[exp]
157 / 8e-46 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2)
Lus10019320
[exp]
73 / 1e-15 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2)
Lus10011505
[exp]
68 / 8e-14 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G048000
[exp]
100 / 2e-25 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2)
PFAM info
Representative CDS sequence
>Lus10010220 pacid=23154195 polypeptide=Lus10010220 locus=Lus10010220.g ID=Lus10010220.BGIv1.0 annot-version=v1.0
ATGGGGATCGCCTTCCTAGAGGATGCACGTACCACAATGAAAATTGCCCTGGCAAAGATGAATGGAATTGATAAAGAGATCCCAATGATTACGTCAGAAG
TGAAGCATGTACCTAAAGATGAAGGCCCCAGACTTCTCCTTCACAAAATACCAAGCACTGTGCCTAGTGAAGAAGTAGGAAGGATCTTTCCTGTGAATTT
CACCATTCAACTAAAGGATTGCAATGGCCTGGCACAAAAGCTGGTTACACTCATGTCCAACAAAGGAAAAAAGTATAGTTTCTATGTGCGTAAAATGCCG
CCGGAGGGTTCCTCCGAGGATTCGCAGCGAAAGAGATCACTGGAAATCGAAGATGATGACGGCAGTGAAAAGAAGAAGCTAAAGACAGTCGATAGCCATG
TTGAAGAGATTGAAAGACTGAAGCAGGAACTGAGAGCCAAGGACGAAGCTCACTCGAAAGACAAAAAGGAGAGCAGAAAGAAGAAATTAGGGATGTAA
AA sequence
>Lus10010220 pacid=23154195 polypeptide=Lus10010220 locus=Lus10010220.g ID=Lus10010220.BGIv1.0 annot-version=v1.0
MGIAFLEDARTTMKIALAKMNGIDKEIPMITSEVKHVPKDEGPRLLLHKIPSTVPSEEVGRIFPVNFTIQLKDCNGLAQKLVTLMSNKGKKYSFYVRKMP
PEGSSEDSQRKRSLEIEDDDGSEKKKLKTVDSHVEEIERLKQELRAKDEAHSKDKKESRKKKLGM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G67240 SDN3 small RNA degrading nuclease 3... Lus10010220
[exp]
0 1
AT3G15810 Protein of unknown function (D... Lus10006656
[exp]
3.5 0.7260
AT5G09360 LAC14 laccase 14 (.1) Lus10026812
[exp]
6.3 0.7731
AT4G02340 alpha/beta-Hydrolases superfam... Lus10004439
[exp]
8.5 0.6614
AT3G02100 UDP-Glycosyltransferase superf... Lus10003456
[exp]
19.1 0.6683
AT2G31180 MYB ATMYB14, Myb14a... ARABIDOPSIS THALIANA MYB DOMAI... Lus10022021
[exp]
22.1 0.6683
AT4G29340 PRF4 profilin 4 (.1) Lus10012935
[exp]
24.7 0.6683
AT5G17540 HXXXD-type acyl-transferase fa... Lus10020333
[exp]
25.8 0.6479
AT2G04810 Protein of unknown function (D... Lus10020538
[exp]
27.3 0.6653
Lus10038003
[exp]
27.7 0.6265
AT2G42430 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, la... Lus10024877
[exp]
28.7 0.6382

Lus10010220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.