Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56140 838 / 0 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 834 / 0 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G12470 167 / 1e-45 Protein of unknown function (DUF3411) (.1) AT5G22790 98 / 2e-21 RER1 reticulata-related 1 (.1) AT5G24690 84 / 1e-16 Protein of unknown function (DUF3411) (.1) AT2G37860 83 / 1e-16 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G08640 73 / 1e-13 Protein of unknown function (DUF3411) (.1) AT3G08630 73 / 1e-13 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040960 [exp] 986 / 0 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10009845 [exp] 985 / 0 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10017422 [exp] 356 / 4e-117 AT3G56140 290 / 3e-92 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10019744 [exp] 174 / 5e-48 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 174 / 1e-47 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 170 / 2e-46 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 169 / 6e-46 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10043364 [exp] 87 / 7e-18 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10003242 [exp] 79 / 4e-15 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074300 [exp] 887 / 0 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.001G256300 [exp] 182 / 2e-50 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 179 / 1e-49 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 178 / 2e-49 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.009G150400 [exp] 91 / 3e-19 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G103100 [exp] 86 / 2e-17 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.001G210500 [exp] 84 / 9e-17 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 83 / 3e-16 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 73 / 1e-13 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 72 / 4e-13 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related CL0572 [flax] [poplar] TIKI PF04187 [flax] [poplar] Cofac_haem_bdg Haem-binding uptake, Tiki superfamily, ChaN
Representative CDS sequence Show only first row Show all	>Lus10010224 pacid=23154197 polypeptide=Lus10010224 locus=Lus10010224.g ID=Lus10010224.BGIv1.0 annot-version=v1.0 ATGAAGCAGCACCATATCCACCACCGGCAGTTCTTCACCTCCTCCGCGCCAAACCCGCCGCAGCTACAGCCTCCACCACACCTCCACCGCCAGTTTCCAA CTGAATCCCGCCACCACCCCCGCCTATCAATTTCAGTCAGCTCCAGTCAAACCACCCCTGGTAGTCCAGAAGAATGCGGCCAGAGTCAAACCAGCAATTC CGTTGGCGCGAAGAGAAGGCATATCCTGATTGCTCCGCTCTTGACTCTCGGCGTTTCCGTTCTCCACTCCTCCGTCTCCAGAGCGGATGACGCAATTCCA CAGCCGGCGTCTTCCCCTCCCCCTCCTCCTGCTCCTCCGTCTCTGTCTCCGCAGCCGCAGGTCCAACCTCCGCCGCCGGCAGAGGTGATGCCGATTAATG CGAGGATATACGACGCGACGGTGATTGGAGAGCCGCTAGCTCTAGGGAATGAAAAGAGCGCTAAAGCGCTGGAGAAACTGTCGAGTGCTAGGATAGTGTA TTTAGGCGAAGCGGAGCAAGTCCCTACTCGGGAGGATAAGATATTGGAGCTTGAAATCGTAAAGAGCTTGAGAAAACGATGCGTTGACAGCCAGAGGTCC ATTTCCTTGGCAATGGAGGCGTTCCCTTGTGAATTGCAGCCGAAGCTCGACGAATACCTCGATAAAAGGATAGATGGAGAAACTTTCAAGTCTATCTTAT CGAATTGGCCTCCTGAACGTTGGCAGGAGTATGAGCCTCTTTTAAGCTATTGCCGCGATAATGGAGTCCGAATTGTTGCTTGTGCTGTCCCTCCTAAGGT GCTGAGGACTGTCCAAGCAGAAGGCCTTCACGGACTTTCAAAGCCTGACCGAAAACTATATTCTCCTCCAGCAGGTTCAGGCTTCGTATCAGGGTTCACC TACATTTCTCGCAGATTAAGTGACTTGAACAATGAAAACCTATCCCTTTCCATCGGTCCGAGCTCATACTTGTCTGCACAAGCTAGAGTAGTAGAGGAAT ACACCATGTCACGGAATATTCTGAGAGCGGTGGAGGATGGAGGATCTTCTGGCCTGCTGGTGGTGGTGACTGGAGCTAGTCATGTTACTTATGGATCAAG GGGAACTGGGATACCCGCAAGAATATCAAAGAAGATGCAGAAGAGGAGCCAAGTTGTCATATTGATGAACCCCGAAAGACAATTCATCCGAAGAGAAGGC GAAGTTCCTGTTGCAGACTTTTTATGGTATTCTGCTGCTAGGACCTGTAGCAGAAACTGCTTCGATCGTGCTGAAATTGCTCGGGTTATGAATGCTGCTG GTAGGAGGAGAGATGCACTTCCACAGGATCTTCAAAAGGGTCTTGATCTTGGATTAGTATCTCCGGAGGTGCTACAGAATTTCTTTGATCTGGAGCAATA TCCTCTCATAAAGGAACTCACCCATCGTTTTCAGGGTTTCAGAGAGAGGCTATTGGCAGATCCAAAATTTCTGCATAGGTTAGCCATAGAAGAAGCCATT TCAATCACCACTACTCTCATCGCACAGTACGAGAAGCGCAAGGAAAATTTCTTCGAGGAGATAGACTACGTGATCACAGACACAGTCAGGGGATCCGTTG TTGATTTCTTCACCGTGTGGCTTCCAGCTCCAACGCTTTCCTTCCTTTCGTATGCAGACGATCTGAATCCTACTGACAACATCGAGGTTCTAAAAGGCCT ACTGGGTTCCATCCCGGATAACGCGTTTCAAAAAAATCTAGCAGGAAAGGACTGGAATTTAAGTCACAGAGTTGCATCTGTGCTTGTTGGCGGCCTTAAG CTCTCTGGTGTAGGATTTGTTTCCAGCATCGCAGCAGTAGCTTCCTCGAATGCATTAAAGTCGGTTCGCACACTGGTTAGTCCGGAACCGGTTAAAGTCC AACGGATTAAACGATCTCCGATACTCAAAACTGCTGTTGTGTATGCAAGCTTTCTCGGCATATCAGCGAATCTGCGATACCAGATTATTGCTGGACTAGT GGAGCATAGGATATCTGATGAACTCTCTTCACAACCAGTACTTGTAGCGATGCTGTCATTCGTGGTTCGGACAATCAACTCCTATTTGGGAACCCAGCAA TGGATCGATCTTGCGCGATTTTCGGGACTACAAAGCAGGAGTAGTGAGCCAGAAGCTGTCTCCTCTAATTATCAGGCAGTAGTGGAACCTCCATTGAATC TGATTGTGGAAAGCGAAACCACTGAAGAATCAAGCACTGAAGTCGAAACAAATAACTGA
AA sequence Show only first row Show all	>Lus10010224 pacid=23154197 polypeptide=Lus10010224 locus=Lus10010224.g ID=Lus10010224.BGIv1.0 annot-version=v1.0 MKQHHIHHRQFFTSSAPNPPQLQPPPHLHRQFPTESRHHPRLSISVSSSQTTPGSPEECGQSQTSNSVGAKRRHILIAPLLTLGVSVLHSSVSRADDAIP QPASSPPPPPAPPSLSPQPQVQPPPPAEVMPINARIYDATVIGEPLALGNEKSAKALEKLSSARIVYLGEAEQVPTREDKILELEIVKSLRKRCVDSQRS ISLAMEAFPCELQPKLDEYLDKRIDGETFKSILSNWPPERWQEYEPLLSYCRDNGVRIVACAVPPKVLRTVQAEGLHGLSKPDRKLYSPPAGSGFVSGFT YISRRLSDLNNENLSLSIGPSSYLSAQARVVEEYTMSRNILRAVEDGGSSGLLVVVTGASHVTYGSRGTGIPARISKKMQKRSQVVILMNPERQFIRREG EVPVADFLWYSAARTCSRNCFDRAEIARVMNAAGRRRDALPQDLQKGLDLGLVSPEVLQNFFDLEQYPLIKELTHRFQGFRERLLADPKFLHRLAIEEAI SITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADDLNPTDNIEVLKGLLGSIPDNAFQKNLAGKDWNLSHRVASVLVGGLK LSGVGFVSSIAAVASSNALKSVRTLVSPEPVKVQRIKRSPILKTAVVYASFLGISANLRYQIIAGLVEHRISDELSSQPVLVAMLSFVVRTINSYLGTQQ WIDLARFSGLQSRSSEPEAVSSNYQAVVEPPLNLIVESETTEESSTEVETNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	0	1
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	2.2	0.9351
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	2.8	0.9114
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	6.9	0.9057
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10035332 [exp]	7.0	0.8826
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10042534 [exp]	9.2	0.8860
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10014015 [exp]	10.6	0.8551
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	11.1	0.8958
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	11.6	0.8742
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	12.0	0.8497
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	13.6	0.8835

Compare expression of checked genes

Lus10010224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.