Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40390 527 / 0 unknown protein AT5G64190 488 / 1e-169 unknown protein AT2G15020 140 / 7e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009844 [exp] 725 / 0 AT2G40390 517 / 0.0 unknown protein Lus10017423 [exp] 192 / 6e-60 AT2G40390 119 / 7e-33 unknown protein Lus10026592 [exp] 123 / 6e-30 AT2G15020 518 / 2e-180 unknown protein Lus10013880 [exp] 117 / 5e-28 AT2G15020 516 / 1e-179 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183100 [exp] 664 / 0 AT2G40390 590 / 0.0 unknown protein Potri.009G094100 [exp] 152 / 3e-40 AT2G15020 592 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010225 pacid=23154198 polypeptide=Lus10010225 locus=Lus10010225.g ID=Lus10010225.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCAGCTACCACCCTGATGTGTTAGCCTGGATTCAGAGCCTTCCTCCAATTACTCAATGGAAAGAAAACCCCATCTCCATTACCATACATT CTTCCACTTCTTCTTCGTCCCTCAAGTTTTCCATTCGGAAGAACCATCAGTCTCCCACGGTTTTCTTTTCGATAACTGCTGGTCTGAGCTGGAACATATC CCTTTGGTCCTCAAAACCTATTAAACCAAACTCCAACAACCCCCTTAAGTTGTTTGACTGTGAAGCGATTTCGCTTCTGTTGACAAATTTCATCGAAGAC ATCCTTAGTTATGGCCCCAACAAGTGCAGGTCGTCTGTTAGAATCCCGAAGATGGACTCTCTTCCGAACTTCAAGGCCATATTCAACCTCTCATTCTTCA CACTTACTCTCCTGGTCTGCATCTACGAGGCTCCTGCCGATATCCGGTGCGATTGCTTGACCAACCTGAAGGAACAGCTCACTGATTGTCGAATGAGGGA CGCGTCGAGATCGCTGATGAAGCTGATGGGTTCTAACCTGGAAGAGCAGTGGATGAGGTCCATTAATCTGGCGATCACGAACTGGATTGTGGAGCTTCAA GCTGCTAAGAGGACTTTCAGGACGCCTTCCCCACTTTTTTCTCACTCGTTTTCGACCTTGGGGCTATGGAAAGTTCAGCTCTACTGTCCTGTCATAGCCA TGAACATGGAGAGCTCTTCCAGTGGGTCTTCGGCTGATGAGAAACTTCTCTTCTCCCTGAGATATCAGCAGCTTGAAGGCGTTATGCAGTTCAACTATGA AGTTATCAAGCAAGAGAAGTGGGTTGATGTCACTGTATACACAGATAACATAAGGCAAGTTCCTTATAAGTGCGACATATGCCGGCTGGTGAACGAAACC CTGATGGCTGAACGAGGAGTTGGCTCCGAGGAGAAGCATTTCCCGTCTCGAATCGCAATCCATATAACTCCAATCCTCCAGACAAACATAATCAGTGTAT CGGTGAGCAGCTCTTCATCGAATCCTCTGAGGGAAATCGAGCTGGAAAAGGGGATAGAGACTTCCTTTGATCCACCAAACAGCATGGGACTCAAGCTTTC AGCCGGGGAAACAGTGTCAATGAGCCTGAAGCCATGGAAATTTGAAGGCTCTGTGTATGCCTACAGTGCAGTTTTCAGCTGGTTTCTTCATGATAACGTG GATGGTAGGGAGGTAGTGTCCTCCAAACCATCACCTTTGGCGCTGATCAATCCTAAATCCTGGTTCAAGGACCGGTACAGGACGGCTTACCGGCCGTTTA CAAGGCAAGGAGGGGTGGTGTTTGCTGGGAGTGAATATGGGAAGAGCATAACCTGGAAAGTGGATAAAGCTGCTATAGGGAAGACAATGGAGTTCGAGAT CAGGGGGTGGATTTGGCTCACGTATTGGCCTAACAAGCATAGGACGTTTTACAGTGAGACTAGGAAGCTGGAATTCAGGGAAATTGTCAACCTTACCATA GCTTAG
AA sequence Show only first row Show all	>Lus10010225 pacid=23154198 polypeptide=Lus10010225 locus=Lus10010225.g ID=Lus10010225.BGIv1.0 annot-version=v1.0 MASSSYHPDVLAWIQSLPPITQWKENPISITIHSSTSSSSLKFSIRKNHQSPTVFFSITAGLSWNISLWSSKPIKPNSNNPLKLFDCEAISLLLTNFIED ILSYGPNKCRSSVRIPKMDSLPNFKAIFNLSFFTLTLLVCIYEAPADIRCDCLTNLKEQLTDCRMRDASRSLMKLMGSNLEEQWMRSINLAITNWIVELQ AAKRTFRTPSPLFSHSFSTLGLWKVQLYCPVIAMNMESSSSGSSADEKLLFSLRYQQLEGVMQFNYEVIKQEKWVDVTVYTDNIRQVPYKCDICRLVNET LMAERGVGSEEKHFPSRIAIHITPILQTNIISVSVSSSSSNPLREIELEKGIETSFDPPNSMGLKLSAGETVSMSLKPWKFEGSVYAYSAVFSWFLHDNV DGREVVSSKPSPLALINPKSWFKDRYRTAYRPFTRQGGVVFAGSEYGKSITWKVDKAAIGKTMEFEIRGWIWLTYWPNKHRTFYSETRKLEFREIVNLTI A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40390			unknown protein		Lus10010225 [exp]	0	1
					Lus10032559 [exp]	1.4	0.8947
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	3.9	0.7960
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	8.4	0.7931
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	9.9	0.8030
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	11.5	0.7897
AT5G44005			unknown protein		Lus10003608 [exp]	12.3	0.7871
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	16.1	0.7696
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	18.7	0.7874
AT3G01960			unknown protein		Lus10012546 [exp]	20.5	0.7383
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	20.8	0.7935

Compare expression of checked genes

Lus10010225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.