Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56130 231 / 1e-75 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) AT1G52670 132 / 5e-37 Single hybrid motif superfamily protein (.1) AT3G15690 130 / 1e-36 Single hybrid motif superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017424 [exp] 482 / 1e-174 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10009843 [exp] 297 / 2e-101 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10040959 [exp] 251 / 2e-82 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10011480 [exp] 128 / 1e-35 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) Lus10023118 [exp] 123 / 2e-33 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074100 [exp] 268 / 3e-90 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 249 / 8e-83 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.001G172600 [exp] 122 / 3e-33 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) Potri.003G061400 [exp] 119 / 7e-32 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10010226 pacid=23154205 polypeptide=Lus10010226 locus=Lus10010226.g ID=Lus10010226.BGIv1.0 annot-version=v1.0 ATGGAGTCCTCCGTCTTCTCCCGCTCCTTCCACTGTTCTGTGCCTATGATCTCAAGCGTTCAGGCTGTAGCCGAAAGGACTGGCGCAGTTTCTGGCTACT TCAGTAAGAAGCTGGTCTGCTCTCCTGCTAAGAGGAGCCTGTCGCTAGCATCGTGCTCGAAGTCTGATGATGGTGCCACATCAGTTGCATCGCGAGCAAC TTTTCCCAGAGATTTTGAAGCTCTGATGCTTGAGGTCTGTGATGAAACGGAAGTTGCAGAGCTGAAATTGAAGGTCGGGGACTTTGAAATGCATCTGAAG CGTAATGTAGGAGCTTCAAAAGCCTCATCTCCCAACATTTCACCAATAGTTGCACCACCAATTCCATCTCAACCAATGGATGTAGCAGCTCCTGCTGCCC CATCAGCACCAGCTGCACCACAACCTCCCCCACAGAAGAATGAGCCATTCAAGAACGTCTCCTTTGGAAAGTCGCCCAGGTTGGCAGCTCTGGAGGCTTC TGGATCTAATGGCTACGTTCTGGTGGCTTCTCCATCGGTTGGTTCGTTTCTGAGGAGTCGTACAAGGAAGGGAAAGGTGCTACCTCAGGTTTGCAAAGAG GTATATGTCCTACCTCAGGGTGATATGATTAGAGAAGGGCAGATCATTGGATATCTCGAACAGTTTGGCGCTCAAGTTCCTGTGAGGTCAGATGTAGCTG GGGAAGTTTTAAAGATGCTCTTTGATGCTGGAGAAGCGGTTGGGTACGGAGACCCTCTCATTGCTGTGCTGCCATCTTTTCATGGGATCGAGAAGTAA
AA sequence Show only first row Show all	>Lus10010226 pacid=23154205 polypeptide=Lus10010226 locus=Lus10010226.g ID=Lus10010226.BGIv1.0 annot-version=v1.0 MESSVFSRSFHCSVPMISSVQAVAERTGAVSGYFSKKLVCSPAKRSLSLASCSKSDDGATSVASRATFPRDFEALMLEVCDETEVAELKLKVGDFEMHLK RNVGASKASSPNISPIVAPPIPSQPMDVAAPAAPSAPAAPQPPPQKNEPFKNVSFGKSPRLAALEASGSNGYVLVASPSVGSFLRSRTRKGKVLPQVCKE VYVLPQGDMIREGQIIGYLEQFGAQVPVRSDVAGEVLKMLFDAGEAVGYGDPLIAVLPSFHGIEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56130			biotin/lipoyl attachment domai...		Lus10010226 [exp]	0	1
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10009873 [exp]	1.7	0.8665
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	6.9	0.8504
AT3G55550			Concanavalin A-like lectin pro...		Lus10004709 [exp]	7.2	0.7971
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	13.2	0.8218
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	16.0	0.8077
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	16.1	0.8213
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	16.9	0.8062
AT1G53290			Galactosyltransferase family p...		Lus10017943 [exp]	18.0	0.8150
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	18.1	0.8294
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	18.6	0.8239

Compare expression of checked genes

Lus10010226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.