Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45207 394 / 1e-130 Remorin family protein (.2) AT4G36970 142 / 1e-36 Remorin family protein (.1) AT1G53860 60 / 2e-09 Remorin family protein (.1) AT2G02170 52 / 9e-07 Remorin family protein (.1.2) AT1G30320 51 / 2e-06 Remorin family protein (.1) AT1G67590 50 / 2e-06 Remorin family protein (.1.2) AT2G41870 44 / 0.0002 Remorin family protein (.1) AT3G57540 44 / 0.0002 Remorin family protein (.1) AT3G61260 43 / 0.0003 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009750 [exp] 1007 / 0 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10005708 [exp] 686 / 0 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10042649 [exp] 651 / 0 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10027302 [exp] 221 / 3e-66 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10039007 [exp] 212 / 9e-63 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10003936 [exp] 59 / 1e-08 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037454 [exp] 54 / 2e-07 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10042367 [exp] 48 / 5e-06 AT3G57540 153 / 5e-46 Remorin family protein (.1) Lus10038522 [exp] 48 / 7e-06 AT1G30320 296 / 2e-98 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027900 [exp] 572 / 0 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 556 / 0 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.005G138500 [exp] 273 / 8e-86 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.007G044350 [exp] 84 / 1e-18 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.001G163000 [exp] 64 / 1e-10 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.008G178300 [exp] 55 / 1e-07 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.008G144300 [exp] 53 / 4e-07 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.014G081300 [exp] 48 / 4e-06 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 47 / 1e-05 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.010G056800 [exp] 47 / 2e-05 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10010227 pacid=23174322 polypeptide=Lus10010227 locus=Lus10010227.g ID=Lus10010227.BGIv1.0 annot-version=v1.0 ATGCCGGAACTCGCAACGCACCTTCACCAAGATCATCTCGGAGGTCGAGACTTCAGTCCCGATTCCGTGATTTTCACGCCTGAGTCCAACTTCAGTCATT TCTCCTCCGCCTCCTCTAGCGCCGACCGCTCCTCCTTCGCTTCTGACGCTCACGATAACGACTCCCTTGCCTACGAATTCTCATCGCGTTTGGCAGTGAG CGCCGGCGGAGTAGATGAACTTGTGTTTCATCATCAGGACAGTTGGAGTGGTGGTCCAGATCCAAATCCAAAGAAAGCGACTGAACCAGCCCGGCTTTCG TCCAGAAAGAGAGATAATGTGAAAGCTTGTAAGGACGGCAGCAACAGAGCTAATGCACTTCACGAAGGCGAGAATCAGCTGCTTGATCCAGCTAGAAGCT CCTTCTCTCTTGCTTTCAAAGAGTGTCATGATCGGAGATCCAGATCTGACGCCGTCGCGAAGAATGCGGAAAGGAGAAGGCCTGCATCGTTTGATTTAAG CAATGTCTTGCCAGCGTCCTCCTCCCCACGGTTGGAGGCCGTAATAAACAGCTCAATCTCGTCGTCTCGTAAGCCGGCGACGTTTCCTAGCCCTGGCACA CCAAACTATCGCCACGAGAGTGTTGGATTGATCCAGACGGGTTGGAGCTCGGAGAGAGTACCACTGCATGCAAGTGCCACCAGTCGCCAGCTTAGCAGCG GTGGTTTGTTCCCTTACAATAACGGGAGGGCCATGCCGTCGAAATGGGAGGATGCTGAGCGCTGGATTGTTAGCCCTATTTCTGGAGATGGTTTAGTGAA GACGTCTCTTCCACAGCCGCACAGAAGACCCAAGGCTAAGAGCGGGCCGCTGGGTCCTCCTGGGGTTGCTTATCACTCTCAATACTCTCCGGTTATACCG GCAATTGAAGGCGGGAATCTAAAGAACCTCACGGTTGGTTCTCCTTTCTCTGCTGCTGTTTTTGCTGCTGATGGACTGGGTGGTCGTGCGAATTGCCATG GAGTTGGCTTTCCTGTCCGTACAGATCCTTGCATGGCCCGTTCTGTTAGCGTCCATGTATGTTCCGAGGTGGTAGCTCAAGCGTCCTTTTTGCCTTGTCA AGAGGATCAAGTTGAGTGTGTCAAAGATGCTGCCACTGATATATCCCGTGTTGTTTCAAGAAGAGACATGGCGACTGAAATGAGTCCTGCAAGCAGTAAC CATTCGTCTCCTAGCAAAAGGCTGTCGCTCATGGCTTCCACTCCCTCTGTCCTGCCCATCGTGGAAGCACAAAACTTTCAGTCCCCTAAATCAGAAGTTA GGGATGTTCAGGTAGATGAAACGGTTATTGTTACTAGGTGGCCCAGAAAACATAGGGGCAGCAATCATAGCAAAGGTTCTGAAATATTTGATTGGAGAAA AAAAGTTGTCGGTTGTCGATCTTCAGCGTGGGAAGTTTCAGAAACCTCTACTAGTTTTTCCAAATCACAAAGAGAGGAAGCTAAAATATCAGCATGGGAA AACCTGCAGAATGCAAAGGCTGAAGCAGCGATAAGAAAGCTCGAGGTTGGTTTTGGTCCCAGTGAATTATCTGACAATGTGCATCTCAATTCTCGGATGA AGCTTGAAAAGAATAGGTCGTCCTCAATGAAGAGAATCATGAAAAAGTTGAGATCAGCGCAGAAGAGAGCCCAAGAGATGAGAAGTTCAGTTGTGGACAA TGAGGGGCGTCAAGTTTCAAGGAGCTCTGAGAAGAAGAACGTATCATTCCAGAAAAACCATCAGAAGGGTGTGCTTAGCGGCTGCTTTACATGCCCTGCT TTCTAA
AA sequence Show only first row Show all	>Lus10010227 pacid=23174322 polypeptide=Lus10010227 locus=Lus10010227.g ID=Lus10010227.BGIv1.0 annot-version=v1.0 MPELATHLHQDHLGGRDFSPDSVIFTPESNFSHFSSASSSADRSSFASDAHDNDSLAYEFSSRLAVSAGGVDELVFHHQDSWSGGPDPNPKKATEPARLS SRKRDNVKACKDGSNRANALHEGENQLLDPARSSFSLAFKECHDRRSRSDAVAKNAERRRPASFDLSNVLPASSSPRLEAVINSSISSSRKPATFPSPGT PNYRHESVGLIQTGWSSERVPLHASATSRQLSSGGLFPYNNGRAMPSKWEDAERWIVSPISGDGLVKTSLPQPHRRPKAKSGPLGPPGVAYHSQYSPVIP AIEGGNLKNLTVGSPFSAAVFAADGLGGRANCHGVGFPVRTDPCMARSVSVHVCSEVVAQASFLPCQEDQVECVKDAATDISRVVSRRDMATEMSPASSN HSSPSKRLSLMASTPSVLPIVEAQNFQSPKSEVRDVQVDETVIVTRWPRKHRGSNHSKGSEIFDWRKKVVGCRSSAWEVSETSTSFSKSQREEAKISAWE NLQNAKAEAAIRKLEVGFGPSELSDNVHLNSRMKLEKNRSSSMKRIMKKLRSAQKRAQEMRSSVVDNEGRQVSRSSEKKNVSFQKNHQKGVLSGCFTCPA F

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	0	1
AT1G47380			Protein phosphatase 2C family ...		Lus10006485 [exp]	1.0	0.8597
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	4.9	0.7951
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	7.3	0.8418
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	8.5	0.8105
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	12.2	0.8010
AT1G74860			unknown protein		Lus10033128 [exp]	17.5	0.7366
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	19.4	0.8190
AT2G47960			unknown protein		Lus10018483 [exp]	19.6	0.7889
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	25.0	0.7814
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	25.0	0.7812

Compare expression of checked genes

Lus10010227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.