Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45688 280 / 6e-93 unknown protein AT5G42860 248 / 1e-80 unknown protein AT4G35170 154 / 1e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 122 / 3e-32 unknown protein AT3G24600 91 / 4e-20 Late embryogenesis abundant protein, group 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009749 [exp] 326 / 2e-111 AT5G42860 256 / 2e-84 unknown protein Lus10029743 [exp] 231 / 5e-74 AT1G45688 301 / 4e-101 unknown protein Lus10010231 [exp] 161 / 1e-49 AT5G42860 84 / 1e-20 unknown protein Lus10022644 [exp] 167 / 4e-49 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025793 [exp] 160 / 2e-46 AT1G45688 221 / 5e-70 unknown protein Lus10035869 [exp] 157 / 1e-45 AT1G45688 219 / 3e-69 unknown protein Lus10023652 [exp] 128 / 3e-34 AT1G45688 183 / 2e-55 unknown protein Lus10034926 [exp] 128 / 3e-34 AT1G45688 182 / 5e-55 unknown protein Lus10003341 [exp] 127 / 1e-33 AT2G41990 221 / 4e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026800 [exp] 327 / 7e-112 AT1G45688 301 / 2e-101 unknown protein Potri.002G124600 [exp] 321 / 2e-109 AT1G45688 284 / 1e-94 unknown protein Potri.007G045000 [exp] 260 / 2e-85 AT1G45688 273 / 4e-90 unknown protein Potri.009G140600 [exp] 160 / 7e-47 AT2G41990 232 / 5e-75 unknown protein Potri.004G180900 [exp] 160 / 1e-46 AT2G41990 256 / 1e-84 unknown protein Potri.001G183600 [exp] 147 / 1e-41 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 146 / 2e-41 AT1G45688 176 / 6e-53 unknown protein Potri.006G160100 [exp] 137 / 7e-38 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.009G061300 [exp] 73 / 2e-14 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 69 / 8e-13 AT3G08490 196 / 6e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010232 pacid=23174312 polypeptide=Lus10010232 locus=Lus10010232.g ID=Lus10010232.BGIv1.0 annot-version=v1.0 ATGCACGCCAAGACCGATTCCGAGGTCACCAGCCTGGCTCCATCATCCCCGACCAGATCTCCTCGCCGTCCGGTGTACTACGTCCAGAGCCCTTCTAGAG ACTCCCACGATGGGGAGAAAACCACCACTTCCTTCCATTCCACCCCTGTCATCAGCCCTATGGGCTCCCCGCCTCACTCCCACTCTTCCGTCGGCCGTCA CTCTCGCGAATCCTCCTCCACCAGGTTCTCCGGCTCTCTCAAGCCTGGATCTAGGAAGATCTCCCCCACACGCGGCCCCGGCAGGGGGGGCGGCGGCGGT GGACACAGGAACGGGAATGAGAAGCAATGGAAGGACTGCGATGTGATTGAGGAAGAAGGTCTTCTCGAGGATGAAGATCGGGAGAGAGGAATCCCTCGCC GTTGCTATTTCCTTGCCTTTGTGCTTGCGTTCATCCTTCTCTTCTCTATGTTCTCCTTGATTCTCTGGGGCGCTAGCAGACCTCAGAAGCCCAAGATCTC GATGAAGAGCATTAAGTTCGACCATTTCAGCATCCAAGCTGGATCCGATGCATCCGGAGTAGCGACTGATATGATCACAGTAAACTCCACGCTGAGGATG ATCTATCGTAACACTGGAACTTTCTTCGGAGTTCACGCGACTACGACGCCCGTGGATCTGTCCTACTCTCAAATCGCCATTGCTTCCGGAACGATGAAGA AGTTTTATCAGAAGAGAAGTAGTCAGAGATCCGTGGCGATATCGATAGGCGGGGATAAAATCCCGATGTACGGAAGCGGAGCAGGACTGAGCAGTACGGC AACTGGAAGGCCGTTGCTTCCGATTCATCTGACGCTCAATTTCACAGTGAAATCAAGAGCCTACGTTCTTGGGAAATTGGTGAAGCCGAGATTCTACAAG ACGATTGGATGCGACATTACTTTCGACCCAAAGAAGCTTAACGCCACAATCTCGCTCAAGAACGCCTGCACATACGACTGA
AA sequence Show only first row Show all	>Lus10010232 pacid=23174312 polypeptide=Lus10010232 locus=Lus10010232.g ID=Lus10010232.BGIv1.0 annot-version=v1.0 MHAKTDSEVTSLAPSSPTRSPRRPVYYVQSPSRDSHDGEKTTTSFHSTPVISPMGSPPHSHSSVGRHSRESSSTRFSGSLKPGSRKISPTRGPGRGGGGG GHRNGNEKQWKDCDVIEEEGLLEDEDRERGIPRRCYFLAFVLAFILLFSMFSLILWGASRPQKPKISMKSIKFDHFSIQAGSDASGVATDMITVNSTLRM IYRNTGTFFGVHATTTPVDLSYSQIAIASGTMKKFYQKRSSQRSVAISIGGDKIPMYGSGAGLSSTATGRPLLPIHLTLNFTVKSRAYVLGKLVKPRFYK TIGCDITFDPKKLNATISLKNACTYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45688			unknown protein		Lus10010232 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	1.7	0.8848
AT5G42860			unknown protein		Lus10009749 [exp]	2.4	0.8764
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	3.2	0.8846
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	3.3	0.8351
AT5G42860			unknown protein		Lus10010231 [exp]	4.6	0.8621
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	5.5	0.8359
AT2G36220			unknown protein		Lus10022709 [exp]	6.0	0.8337
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	7.0	0.7645
AT4G35320			unknown protein		Lus10001621 [exp]	7.1	0.8694
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	7.3	0.8392

Compare expression of checked genes

Lus10010232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.