Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34131 384 / 6e-129 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15480 382 / 3e-128 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 381 / 1e-127 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36780 381 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) AT4G34135 378 / 2e-126 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34138 374 / 8e-125 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36770 374 / 9e-125 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 370 / 1e-123 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36750 365 / 2e-121 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36760 364 / 4e-121 UGT73C2 UDP-glucosyl transferase 73C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019832 [exp] 425 / 1e-144 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 423 / 4e-144 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014084 [exp] 418 / 3e-142 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014086 [exp] 401 / 1e-135 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 400 / 2e-135 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019835 [exp] 398 / 4e-134 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 382 / 2e-128 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 381 / 4e-128 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 372 / 5e-124 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123700 [exp] 642 / 0 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1) Potri.001G302300 [exp] 460 / 8e-159 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 457 / 1e-157 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 446 / 4e-153 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 443 / 4e-152 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 438 / 4e-150 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 437 / 6e-150 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 434 / 2e-148 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 433 / 4e-148 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 427 / 1e-145 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010239 pacid=23174321 polypeptide=Lus10010239 locus=Lus10010239.g ID=Lus10010239.BGIv1.0 annot-version=v1.0 ATGGGTACTGCCGAAAAACCAGAATCCCTCCCCCACGTAATGTTCATCCCGTTCTTAGCACCAGGCCACATGCTCCCCATGGTGGACATCGCCCGCCTCT TCGCCGCCAATGGAGTCAACGTCACAATCCTCACCACCACTACCAACGCCCGCCTCATATCCTCCGCCATTGACCATGATGCCCGCTCTGGCCTCCACAT TTCCCTCCTCACTCTCCGCTTCCCTGGTAAAGAAGCCGGCCTACCCGAAGGCTGTGAGAATCTCATCTCCGCTCCCACCCCTGAAATCAACTTCAAACTC TTCCACGGCATCAAGTTGCTCCAACCAGAGATGGAAAAAATCATACGGGCCCACAATCCTGACTGCCTCGCCTCCGATTACCTCTTCCCTTGGTCTGCCG ATATCGCCTCTGACCTCGGAATCCCTCGACTCGCCTTCAGCGGCAGCGGCTTCTTTAATCTCTGCATCGCCGACAGCATCGAGTCCAACAATCCTCACCG TAGGATTCAGTCTGAAACGGAGGAGTTCGTTGTTCCGGGAATTCCGGATCTGGTGAAGCTCACGCGGTCTCAGCTTCCGGATATGGTTAAAGGCAAAACG GAATTTTCTGGATTCTTCGACACTTTGAAACAGGCGGAGAGGAAAAGCTACGGAGTTTTGATGAACAGTTTTCAGGGGCTTGAATCGGATTATGCTGACC ATTTTAAGCAATTCATTGGGTTGAAGGCTTGGCAATTGGGACCTGTTTCTCTCTTCGTCAATCGGATTAATCTCGACGTCGACAAGTTCAACAGCGGCGG TAAAGCGGCGGCGGATGTCATCACCGGAGATAAATTTTTGAATTGGCTCGATTCCGAGAAACCCAACTCTGTCCTCTATTTTTGCTTGGGAAGTCTCACA AGGTTCACCAAAACACAAATCTCTGAAATAGCTACCGCCTTAGAGGAATCAAATCATCCTTTCATATGGGTAGTTGCCAAAATCCTTAAAGGGGATGTCG ATGAGGACAAGGAAGAAAAAGAAGAATGGTGGTTACCTCAAGGATTTGAGGAGAGGGTGGTCGGGAAAGGAATGATTATAAAAGGGTGGGTCCCTCAGAC GATGATTTTGGAACACGCTTCGATTGGGGGGTTTGTGACGCATTGTGGATGGAATTCGATTATGGAAGGTGTTTGCGGAGGCGTTCCGATGGTGACATGG CCAATTTTTGCGGAACAATTTTACAATGAGAAACTAGTAACTCAAGTGCTTAAGTTAGGAGTGTCTGTGGGAAATCAAGTTTGGTCTGTATGGGCGACAG AGGAATCGCCGTTGATTAAGGCTGAGAAGATAAAAAGTGCGATTGATATCGTGATGGGACAAGGCCCACAAGCGATAGAGATGAGGAAAAAGATACAAAA ATTGGCAGAGATGGCGAAGAATGCAGTTGAAATTGGTGGATCGTCCGACTGTGATTTGAAAAGCTTGTTGAATGATATTAGAGATTACAAAAAAAGAAAA CATAATCGACCGCTGAATGGATATGTGGACGAGGTCTAG
AA sequence Show only first row Show all	>Lus10010239 pacid=23174321 polypeptide=Lus10010239 locus=Lus10010239.g ID=Lus10010239.BGIv1.0 annot-version=v1.0 MGTAEKPESLPHVMFIPFLAPGHMLPMVDIARLFAANGVNVTILTTTTNARLISSAIDHDARSGLHISLLTLRFPGKEAGLPEGCENLISAPTPEINFKL FHGIKLLQPEMEKIIRAHNPDCLASDYLFPWSADIASDLGIPRLAFSGSGFFNLCIADSIESNNPHRRIQSETEEFVVPGIPDLVKLTRSQLPDMVKGKT EFSGFFDTLKQAERKSYGVLMNSFQGLESDYADHFKQFIGLKAWQLGPVSLFVNRINLDVDKFNSGGKAAADVITGDKFLNWLDSEKPNSVLYFCLGSLT RFTKTQISEIATALEESNHPFIWVVAKILKGDVDEDKEEKEEWWLPQGFEERVVGKGMIIKGWVPQTMILEHASIGGFVTHCGWNSIMEGVCGGVPMVTW PIFAEQFYNEKLVTQVLKLGVSVGNQVWSVWATEESPLIKAEKIKSAIDIVMGQGPQAIEMRKKIQKLAEMAKNAVEIGGSSDCDLKSLLNDIRDYKKRK HNRPLNGYVDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10010239 [exp]	0	1
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10013326 [exp]	2.2	0.8882
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	15.0	0.8654
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10027624 [exp]	17.1	0.8864
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	21.4	0.8602
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	34.7	0.8626
					Lus10011666 [exp]	38.6	0.8508
AT5G08240			unknown protein		Lus10040984 [exp]	40.8	0.8700
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	41.3	0.8693
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	97.9	0.8487
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10010113 [exp]	98.7	0.8444

Compare expression of checked genes

Lus10010239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.