Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53160 153 / 2e-44 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT4G34135 150 / 3e-43 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34131 149 / 8e-43 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 145 / 1e-41 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G15480 145 / 2e-41 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 141 / 6e-40 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT3G53150 140 / 2e-39 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G36800 138 / 8e-39 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 138 / 9e-39 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 134 / 4e-37 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010239 [exp] 305 / 1e-102 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2) Lus10014080 [exp] 166 / 1e-50 AT2G15480 330 / 3e-110 UDP-glucosyl transferase 73B5 (.1.2) Lus10019835 [exp] 163 / 7e-48 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10019831 [exp] 155 / 2e-45 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 155 / 6e-45 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014084 [exp] 154 / 7e-45 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019833 [exp] 153 / 2e-44 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019832 [exp] 152 / 4e-44 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014082 [exp] 149 / 6e-43 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123700 [exp] 184 / 3e-56 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 162 / 9e-48 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 159 / 1e-46 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 157 / 6e-46 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.016G097400 [exp] 157 / 1e-45 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G303300 [exp] 155 / 4e-45 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303700 [exp] 154 / 1e-44 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 152 / 4e-44 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G120600 [exp] 152 / 7e-44 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G302400 [exp] 149 / 8e-43 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010240 pacid=23174315 polypeptide=Lus10010240 locus=Lus10010240.g ID=Lus10010240.BGIv1.0 annot-version=v1.0 ATGGGGTTATTTAATTCAAAAGTTAGGGCGTCGTATAAAGTAGTAAGTAATTCAAGGAGCTATCAAAGAGCTTGGCAATTGGGACCTGTTTCTCTCTTCG TCAATCGGATTAATCTCGACGTCAGCAAGTTCACCAGCGGCGGTAAAGCGGCGGCGGATGTCATCACCGGAGATAAATTTTTGAATTGGCTCGATTCCGA GAAACCCAACTCTGTCCTCTATTTTTGCTTGGGAAGTCTCACAAGGTTCACCAAAACACAAATCTCTGAAATAGCTACCGCCTTGGAGGAATCAAATCAT CCTTTCATATGGGTAGTTGCCAAAATCCTTAAAGGGGATGTCGATGAGGACAAGGAAGAAAAAGAAGAATGGTGGTTACCTCAAGGATTTGAGGAGAGGG TGGTCGGGAAAGGGATGATTATAAAAGGGTGGGTCCCTCAGACGATGATTTTGGAACACGCTTCGATCAGGGGGTTTGTGACGCATTGTGGATGGAATTT GATTATGGAAGGTGTCTGCGGAGGCGTTTCGATGGTGACATGGCCAATTTTTGCGGAATAA
AA sequence Show only first row Show all	>Lus10010240 pacid=23174315 polypeptide=Lus10010240 locus=Lus10010240.g ID=Lus10010240.BGIv1.0 annot-version=v1.0 MGLFNSKVRASYKVVSNSRSYQRAWQLGPVSLFVNRINLDVSKFTSGGKAAADVITGDKFLNWLDSEKPNSVLYFCLGSLTRFTKTQISEIATALEESNH PFIWVVAKILKGDVDEDKEEKEEWWLPQGFEERVVGKGMIIKGWVPQTMILEHASIRGFVTHCGWNLIMEGVCGGVSMVTWPIFAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10010240 [exp]	0	1
AT2G25010			Aminotransferase-like, plant m...		Lus10003764 [exp]	1.4	0.8303
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	2.0	0.8303
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005776 [exp]	5.0	0.7172
AT1G20590			Cyclin family protein (.1)		Lus10036416 [exp]	10.4	0.6711
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	12.8	0.6788
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	13.4	0.7333
					Lus10012676 [exp]	15.1	0.7274
					Lus10007991 [exp]	19.9	0.6957
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	20.7	0.6932
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	21.9	0.7112

Compare expression of checked genes

Lus10010240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.