Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06536 133 / 5e-38 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G06534 73 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010045 [exp] 528 / 0 AT4G06536 149 / 6e-43 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10018730 [exp] 306 / 4e-103 AT4G06536 173 / 2e-53 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10024806 [exp] 163 / 1e-48 AT4G06534 72 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025000 [exp] 284 / 9e-93 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.002G123800 [exp] 283 / 2e-92 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010241 pacid=23174325 polypeptide=Lus10010241 locus=Lus10010241.g ID=Lus10010241.BGIv1.0 annot-version=v1.0 ATGGTCGGATCATCCTCGATAATGGTGCTCCTCACCCGGCTCTGCTCCGGCTGGGAGCAGGAAGTGATCAGGTTAGCGGCGGCTGAGCCGGAGATAAGCT GGGAGGTGAGCCAATTGTCCGCGGATTTTATGCAGAAGATACGGTTGAACCCCGGTGGGGAGAAGAGGAGATTCCTCCTCGGCGCCAGAATCAATGTTCC ATCGGTGATCAGAACAGCTCTGCCGCTACCCGGCCCGTCGCTGGGGAATCAAGTTATTTCGGCGTTTCCTCAAGAGGCCTACTTCGAGATCACAATTTCT TACTCCGGGAGAGAGGATTGCTCTAAGAATGGTCGTCTCAGCCGGAAAGATGAGAATAAGAAGAGTGAAGTAATTTCTTGTGTGGTGATTGGGCTCTCTG TTGGCAGCGGATCATGTCCTCCTTTCAAAATCCCTAGAAGCTATCAAGGCTCTATTGGTTTCAACTCCAATGGCTCTGTTTATCTTGATGGGCTGAAACT TGGGTTGGAATCAAAGGCATCATCAGATTGGAGAAAGACAAGGGGGGAGAGAGTGATAGGATGCGGGTTTGTTCCGAGGCAGAAGAAAGTGTTGTTCACA GTGGATTCCCAGCTAGTACACACAATCCACTGCATGTCAGACGAGTTTGGAACACCTCTGTACCCAACAGTGGCGACCAACGGTGACGTAGTGGTCCTGG TGAACCTGGGACAGAGTGTTTTCAGTTATGAGCCGGCAAATGCGCATAGAACTCCAAACCCTTGCTTCATTGGACCACGGGTAAAGTCTGCTGCTGCTTT AGCTTTAGGTTATGATGAAGAGAGTAAAGAGTTGTTTTCAATGGGGAAGATTGATTCCCAGTGGTTGAACAGAAGTGCCACCAAGTGCCCTCGTATCGAC ATTAAGGAATCCGAAGAGGGGGAGGAATCAGAGGCTGAGTTGTTTGAGATTGTACTCGACAGTGGGCCCATCTCTACTGTTGTCTAG
AA sequence Show only first row Show all	>Lus10010241 pacid=23174325 polypeptide=Lus10010241 locus=Lus10010241.g ID=Lus10010241.BGIv1.0 annot-version=v1.0 MVGSSSIMVLLTRLCSGWEQEVIRLAAAEPEISWEVSQLSADFMQKIRLNPGGEKRRFLLGARINVPSVIRTALPLPGPSLGNQVISAFPQEAYFEITIS YSGREDCSKNGRLSRKDENKKSEVISCVVIGLSVGSGSCPPFKIPRSYQGSIGFNSNGSVYLDGLKLGLESKASSDWRKTRGERVIGCGFVPRQKKVLFT VDSQLVHTIHCMSDEFGTPLYPTVATNGDVVVLVNLGQSVFSYEPANAHRTPNPCFIGPRVKSAAALALGYDEESKELFSMGKIDSQWLNRSATKCPRID IKESEEGEESEAELFEIVLDSGPISTVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	3.0	0.7691
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	5.4	0.7808
AT3G27030			unknown protein		Lus10041550 [exp]	6.5	0.7757
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007799 [exp]	8.4	0.7072
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	8.8	0.7344
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	9.0	0.7140
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	13.4	0.7356
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	19.3	0.6974
					Lus10018645 [exp]	20.5	0.7077
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10007942 [exp]	22.2	0.7074

Compare expression of checked genes

Lus10010241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.