Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22275 261 / 3e-76 ZYP1b Myosin heavy chain-related protein (.1) AT1G22260 254 / 9e-74 AtZYP1a, ZYP1a Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032798 [exp] 684 / 0 AT1G22260 575 / 0.0 Myosin heavy chain-related protein (.1) Lus10041143 [exp] 606 / 0 AT1G22260 451 / 8e-148 Myosin heavy chain-related protein (.1) Lus10036517 [exp] 530 / 4e-179 AT1G22260 663 / 0.0 Myosin heavy chain-related protein (.1) Lus10036473 [exp] 134 / 2e-36 AT1G22275 86 / 6e-20 Myosin heavy chain-related protein (.1) Lus10019419 [exp] 127 / 3e-34 AT1G22260 47 / 4e-07 Myosin heavy chain-related protein (.1) Lus10030096 [exp] 76 / 1e-16 AT1G22275 47 / 4e-07 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096400 [exp] 213 / 2e-59 AT1G22275 786 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010242 pacid=23174317 polypeptide=Lus10010242 locus=Lus10010242.g ID=Lus10010242.BGIv1.0 annot-version=v1.0 ATGAAGAAACTATCGTTTCCTAGCTTGAGGAGCTTGGATCATTTCAAGGTGGCAGCCGGATCGGCAAAGAGGTTCTCGTATCCTTCACGCTCATCTTCCG ATCAGATGTCGCTGGGAAGTTTCAACAATCTAAAGGTCACTGCAGAGAAATTGGTGAAAGAGCAAGCTACTCTGAAAACAGATCTGGAAACTGCGAACAA CAAGCTTAAGAAGTCGGCGGAGAATATCCGTGCTTTAGAGGAAAAGTTGCAGAACGCGTTTATGAGAATAAGAGAAGTGCAGACTGACTACCTAATTGAG GAAAAAGATTCTACGATGAAGCAGTTTGAAGCAAGTCTGGCGGAAAATCAATCAGACATGAGAATACTATATTCGAAACTGGAAAATTTGCATCTTGAAT TAAAGCTAAAGGACGCTGAAATCAAGAATTCCTCGATCGCTGTCCATAACATGGAGAAAGAAAAGAGTGACCTGCAACTAACCAAGGAGAGATTTTCTAA CGATTTAGATGCCTCACATGATGAGATAAGGAAGTTGGAAAGTTATGAAGAGAAAGACCTTGTCTCCAAGTATGCTAACAAGCAGTACGATATGCTCCAC AACCAAGTTGTGGGAATGACATCTGAAAGAGAGATGCAACTGACGATCAAGGAACTGAATGATAAGATATATGAGCTTGAGAAGGCACAAGACTCTATTA GAGAAGTGCTCGCTGAGGAACAGAAATTAGCTGCTCAGAAAATTAGCAAGGTGGAAGCTGAGGCAAAAGCACTAGGAAGAAACAAGGATGAAACGGAGTT TATACTTTCAAACTTGGAGGAGAATTTGCTGCTTTGTCAGAAAGCTCAAGATCATCTGAGAAAGAAATGGTATGCTTCATATCTACTGGGTGAACAACTT CTGCAGAAACTAGCAAGGCTGGAAGAGGAGAACAGAGACAGCTTAGGAAAGTTGCAGGCGGATATACAGGAAAAGGTAGATGAAATCGAAAATCTGCTGA AGGAGTTTGCAAAACATGACCAAGAAGTACATTCGTGGGAGAAGAAAGTCGACGAACTTCAAAACATGGTGCAAGAAAAGGAAGAAATTGTTCTGCAAGG CAAGGAGAGTGAAAGGAAGTTGGAACGTCAAATCAATGAGGTTAAGGCTTCATTGACCACAGCTGAAAGCAGACTCGTGGAAGTAAGGAAGCAATGTGAG GTGATGCTTGACAGCAAAGAATTAGAGTTGTCCAAGCATTTGCAAGAAATTTCTACTGGGAATGATCAGATTACACAGATCCAGCAGGAAAATGAAACAA AGGAAATGACTCTTAAAGCTATTCACAATGAAGAGCTAAAGCATGCAGAACTTCAAGCTGAGGAAGCACAAAGAGAGAAGATACTGCAACTACGAAATGA ACACGAGGTTCGAATGAAAGCTCTGAGAACCCAGTACGAAGGTGTGTGCAAGAAACTACAGGACGAATTGGATATCCAGAAGTCCAAGGAAGATAGGCAT AGGGCTTTGCTGCAGATGCAATGGAAAGTGATGAGTGACAAACAAGATAATAATGATGCAGAAGTGAACTCTAAACAGACACCACCTGCAACCATTGCGA AGTCATCTATGTCAGATTCTTCCATCCCTCCTTTTCGAAGGCCCGTGATGCGATCCCTCGCAAAGGCTCTTCATAACATATTAATCTGCTGTTACGGCAC TGAATACGAGGCTGGACGTGGTGATGGTAAGTCAATTTCGAAACGGAGAAAGATGAGAAATACGGTTGTGCACGAGGATCCTAGGAAGCATAAGAATAGC ACTCCAAAGGCTGTCACTCGACAAACTGCAATCAAGAGAGCCATAGGAGCTACCCAACAAAATCCATCCAACATTGGAGATCTCTTGTCAGAAGGCTCAC TCAATCCATATGCAGATGATCCCTACGCTTTCAATTAG
AA sequence Show only first row Show all	>Lus10010242 pacid=23174317 polypeptide=Lus10010242 locus=Lus10010242.g ID=Lus10010242.BGIv1.0 annot-version=v1.0 MKKLSFPSLRSLDHFKVAAGSAKRFSYPSRSSSDQMSLGSFNNLKVTAEKLVKEQATLKTDLETANNKLKKSAENIRALEEKLQNAFMRIREVQTDYLIE EKDSTMKQFEASLAENQSDMRILYSKLENLHLELKLKDAEIKNSSIAVHNMEKEKSDLQLTKERFSNDLDASHDEIRKLESYEEKDLVSKYANKQYDMLH NQVVGMTSEREMQLTIKELNDKIYELEKAQDSIREVLAEEQKLAAQKISKVEAEAKALGRNKDETEFILSNLEENLLLCQKAQDHLRKKWYASYLLGEQL LQKLARLEEENRDSLGKLQADIQEKVDEIENLLKEFAKHDQEVHSWEKKVDELQNMVQEKEEIVLQGKESERKLERQINEVKASLTTAESRLVEVRKQCE VMLDSKELELSKHLQEISTGNDQITQIQQENETKEMTLKAIHNEELKHAELQAEEAQREKILQLRNEHEVRMKALRTQYEGVCKKLQDELDIQKSKEDRH RALLQMQWKVMSDKQDNNDAEVNSKQTPPATIAKSSMSDSSIPPFRRPVMRSLAKALHNILICCYGTEYEAGRGDGKSISKRRKMRNTVVHEDPRKHKNS TPKAVTRQTAIKRAIGATQQNPSNIGDLLSEGSLNPYADDPYAFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	0	1
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	1.0	0.7668
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	2.6	0.7124
AT5G42470			unknown protein		Lus10034533 [exp]	4.5	0.7609
AT2G34930			disease resistance family prot...		Lus10016338 [exp]	4.7	0.6890
AT2G39580			unknown protein		Lus10029459 [exp]	5.0	0.7442
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	10.7	0.7237
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	11.1	0.7470
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	15.2	0.7011
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	16.4	0.6757
					Lus10008068 [exp]	16.5	0.7107

Compare expression of checked genes

Lus10010242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.