Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009491 [exp] 155 / 4e-47 ND / Lus10021735 [exp] 110 / 1e-30 ND / Lus10008228 [exp] 89 / 2e-21 ND / Lus10035030 [exp] 79 / 9e-19 ND / Lus10033789 [exp] 81 / 1e-18 ND / Lus10011072 [exp] 73 / 3e-16 ND / Lus10001990 [exp] 74 / 4e-16 ND / Lus10021734 [exp] 67 / 4e-14 ND / Lus10033146 [exp] 68 / 6e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010245 pacid=23169938 polypeptide=Lus10010245 locus=Lus10010245.g ID=Lus10010245.BGIv1.0 annot-version=v1.0 ATGGCAGACATTATGGGAGGTAACAGTGCTGGCGGGAATGGAGGTGATTATGATGATCATCGTCGTGCAGCGGAGAAGGAGGCTTCAGAGTGGTCAGTAC CTATGATAGGTGCTTGGGAAGATCATCAAACTAGAATGCTTCCGATTTGGCTACGACGATTGGCGACATGTGAGCGATTTGGCAAGGCCGATTGTTGGAA TCAACTCATTGAGGATCGGGGTATTACAGTTTCGAAGAATGTCCATGACCCAAAAAACCCTAAGACTATAGCTGAGTATGTAGCAGCGAAGCCTAATCTC GACTATGAAGTTCACGATTGGGAGAGGTTTGTAAAGTACAAGACGAGAACAAAAGGAGTGAGGAGTAAGGACAACAGAAATAAACAGTCGATCTATCATA CAACGGGGTTAAAACTATTCAACATAATGCAACTAAAACTGGTGGAAAAGAATATCAATGATCCAGCCATTGATAATTCTCATATTGGTCTGAATGATGT CGTGGGGAGATGCTATGAAGGAAACAAGAAGCCGAGAAGAGTGCGCCATATAGGACTCGCCAAGAAGCCTTCGATGTTCAAGTTATTGGTCCTCATCCGT GGTGTTACTCTCCTGCAAAATCAACGTCCAGGCAATGCTTCTTCCTGTGATCTACTTGCGGCGAGTCATCATCATCGTTCAATACTTTACGAACCAGTTC AAAATCTGACTAACGTCATCAATTAG
AA sequence Show only first row Show all	>Lus10010245 pacid=23169938 polypeptide=Lus10010245 locus=Lus10010245.g ID=Lus10010245.BGIv1.0 annot-version=v1.0 MADIMGGNSAGGNGGDYDDHRRAAEKEASEWSVPMIGAWEDHQTRMLPIWLRRLATCERFGKADCWNQLIEDRGITVSKNVHDPKNPKTIAEYVAAKPNL DYEVHDWERFVKYKTRTKGVRSKDNRNKQSIYHTTGLKLFNIMQLKLVEKNINDPAIDNSHIGLNDVVGRCYEGNKKPRRVRHIGLAKKPSMFKLLVLIR GVTLLQNQRPGNASSCDLLAASHHHRSILYEPVQNLTNVIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010245 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	1.7	0.8336
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	3.5	0.7720
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	4.5	0.7578
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029557 [exp]	5.7	0.7113
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	6.9	0.7304
					Lus10018846 [exp]	11.6	0.7377
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	21.2	0.6703
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003866 [exp]	26.5	0.6730
AT1G23350			Plant invertase/pectin methyle...		Lus10013043 [exp]	30.8	0.5990
AT2G25270			unknown protein		Lus10014341 [exp]	31.3	0.6597

Compare expression of checked genes

Lus10010245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.