Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26780 244 / 3e-80 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 224 / 1e-72 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) AT5G17710 56 / 8e-09 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 46 / 9e-06 Co-chaperone GrpE family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000783 [exp] 353 / 5e-120 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10032565 [exp] 286 / 6e-97 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10043180 [exp] 284 / 1e-95 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10029654 [exp] 50 / 4e-07 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 49 / 1e-06 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 46 / 1e-05 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 45 / 4e-05 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 44 / 7e-05 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065800 [exp] 258 / 2e-85 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 242 / 2e-79 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.013G067900 [exp] 53 / 6e-08 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.002G090000 [exp] 51 / 3e-07 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 47 / 5e-06 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10010247 pacid=23169946 polypeptide=Lus10010247 locus=Lus10010247.g ID=Lus10010247.BGIv1.0 annot-version=v1.0 ATGTCCGGATTGCATCAGTCACCCTCTAATTCTTTCTACTTTCAAAACTTTGGATTCGCTTCATCTGCATCACCTGAGCCAACAGAGAATGAAAAGGCCG CTACTGAAACAACTAACGGAAATGAAGGTGCTCATTCAGAAGATTCAGCTTCTAAAGAATGCAAGGAGTCTTCAGATTCGGAGGATGATGTTGATCTTTC AAGGGATGACTTGTTGAAGCTTGTGGTTGAGAAGGATGATATGCTCAAGGCGAGGCAGGAAGAGTCCGAGAGGATGAAAAATAAATTTCTTCGTGCCTTA GCCGAAAATGAAAATGTGATGCAAAGAACTAAACGTGAAGCAGAGAACTCTAGAAAATATGCCATTCAGAATTTTGCAAAAGGTCTTTTGGATGTTGCTG ACAATCTGGCAAGGGCCTCTTCAGTTTTCAAAGAGAGTTTTGCTAAGATTGATACATCTAAGGACAGCGCACGAGTGGTGCCACTTGTCAAATCACTTTC GGAAGGAGTTGATATGACCGAGAAACAACTCGGGGAGGTTTTTAAGAAATTTGGTGTTGAAAAGTTTGATCCAACGGACGAACCTTTTGATCCACATAGA CACAATGCTGTCTTTCAAGTACCTGATGCTTCTAAGCCTCCAGGCACAGTTGCTCATGTTCTGAAGGCAGGATACATGCTCCACGAGCGGGTGGTTCGGC CAGCAGAAGTTGGTGTTACTGTAAACAATGAAGAGAAGGATGCTTAG
AA sequence Show only first row Show all	>Lus10010247 pacid=23169946 polypeptide=Lus10010247 locus=Lus10010247.g ID=Lus10010247.BGIv1.0 annot-version=v1.0 MSGLHQSPSNSFYFQNFGFASSASPEPTENEKAATETTNGNEGAHSEDSASKECKESSDSEDDVDLSRDDLLKLVVEKDDMLKARQEESERMKNKFLRAL AENENVMQRTKREAENSRKYAIQNFAKGLLDVADNLARASSVFKESFAKIDTSKDSARVVPLVKSLSEGVDMTEKQLGEVFKKFGVEKFDPTDEPFDPHR HNAVFQVPDASKPPGTVAHVLKAGYMLHERVVRPAEVGVTVNNEEKDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55200		MGE1	mitochondrial GrpE 1, Co-chape...		Lus10010247 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	1.7	0.9486
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	9.6	0.9469
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	13.4	0.9385
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	14.1	0.9367
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Lus10025652 [exp]	16.5	0.9005
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	16.9	0.9394
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	17.5	0.9227
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	22.0	0.9319
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10020615 [exp]	22.7	0.9251
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	23.2	0.9340

Compare expression of checked genes

Lus10010247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.