Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012084 [exp] 56 / 9e-11 ND / Lus10010259 [exp] 52 / 1e-08 ND / Lus10005115 [exp] 47 / 8e-08 ND / Lus10020965 [exp] 47 / 4e-07 ND / Lus10001094 [exp] 42 / 9e-06 ND / Lus10019357 [exp] 40 / 0.0002 ND / Lus10010258 [exp] 37 / 0.0005 ND / Lus10034328 [exp] 38 / 0.0008 ND / Lus10019565 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010248 pacid=23169943 polypeptide=Lus10010248 locus=Lus10010248.g ID=Lus10010248.BGIv1.0 annot-version=v1.0 ATGGGTGGTGATGCTAGTGGCGAGGGCGGTGATGAAAATTGCCACCCTAAGAAGGTGAAGAAAGAACGGTATAACTACATATGGTCGAGTTTTGTGAAAG GGTTGGCGAATGAACCTAACACTGATACCAATATAGCAAGAATGATGTTGTTGGGAAAGCATATAATGCAAGGGATAGGCAAGAGAAATCAGGAAGAGTG TGTTATGGTGGGTTTGGAGTTCAAGCAAAATGGTTGGCTTGACCCCGAATTGGAGGAGATGAGGCGTATGCTCGAAAGTCAAGGATGTGGTGGTACCACA ATGCCACCGGATACCAACACTCTAACGAACGTGCATGAAGAGAGAGACGATGAAGATGATGACAATGATGAAGAGCAGTGTTTCAAATTAGGATTATGA
AA sequence Show only first row Show all	>Lus10010248 pacid=23169943 polypeptide=Lus10010248 locus=Lus10010248.g ID=Lus10010248.BGIv1.0 annot-version=v1.0 MGGDASGEGGDENCHPKKVKKERYNYIWSSFVKGLANEPNTDTNIARMMLLGKHIMQGIGKRNQEECVMVGLEFKQNGWLDPELEEMRRMLESQGCGGTT MPPDTNTLTNVHEERDDEDDDNDEEQCFKLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010248 [exp]	0	1
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	1.0	0.8648
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025695 [exp]	2.4	0.8214
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	4.0	0.7588
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	5.5	0.7585
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	7.0	0.7240
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	14.7	0.6862
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	23.5	0.6573
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	24.2	0.6815
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	26.2	0.6341
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	26.7	0.7670

Compare expression of checked genes

Lus10010248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.