Plant FIBer expression Database

Lus10010250 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55220 593 / 0 trigger factor type chaperone family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000783
[exp]
454 / 3e-154 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G065900
[exp]
668 / 0 AT5G55220 664 / 0.0 trigger factor type chaperone family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0487 FKBP PF00254 FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
CL0487 PF05697 Trigger_N Bacterial trigger factor protein (TF)
CL0262 Trigger_C PF05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus
Representative CDS sequence
>Lus10010250 pacid=23169957 polypeptide=Lus10010250 locus=Lus10010250.g ID=Lus10010250.BGIv1.0 annot-version=v1.0
ATGGAGCTCTGTATCAGTTCAACGACGACTACTCTTCTCCCAGCGGTCCGCATGGTCCGGAAATTCGGTTCCAATACTTCTCCCTGTGCTTCTGCTTCGC
TTCGACCCTTGTTGCTTCAGTTGAATAGGAGAGACACATGCTTCTTAAATTTTCGGGAAATTCGACTGCCGGTATTGAGACAATGTTCATCGAAAATTTC
TGCTGCTTCAGCTTCTTCTACTTCAGTAGCCGTTGAAGATGAGAAAGACACTCTTCCTGCTCAACTCAACTTGACTGAGACCGAGGAGCCAAATTCAAGA
GTGAGGTTGGGAGTGGAAGTTCCGTCGGCAGTCTGTGAGGATTGCTACAAGCGAGTCATCAAGGAGTTCTCGAAGAAAGCCAAGGTTCCCGGTTTTCGTC
CTGGAAAAAGCATTCCGGAGAATATTCTTATCAATTACGTTGGCAGGCAAGGTTTTCAGAAGGCTGTTGTTGAGTCTATCTTGCAGAGGACTCTCCCTCA
CGCGTTGACTTCGGTTCCCGGTTTTCGTCCTGGAAAAAGCATTCCGGAGAATATTCTTATCAATTACGTTGGCAGGCAAGGTTTTCAGAAGGCTGTTGTT
GAGTCTATCTTGCAGAGGACTCTCCCTCACGCGTTGACTTCGGAACGGTGGTATTTTAAACTGAGAATGGTTGCGCCTTTGTCAACCCAGGTGAATGAAA
GGGCTTTGAAAGACTCAGTCCGCATAGCTACCAGTTTCTCTGAGATAGAGAAGACGTATTCGTCTCTTAAAACCCTCAGGTATGATATCCTTGTTGATGT
AGCCCCAGAACTCAAATGGAACCCGGAGGATGGATACAAAAATTTGAAGGTTGTTGTGGAAATAGACAGTGATATAGATGCGCAGATAGCTTCCGTACAG
GAATTTAGACGTCGTCACAAGTCCCTTGGTTCCATGAGAATTGTAACTGACAGAGGACTACAGGTGGGTGATGTTGCAGTCCTTGATATATCAGCAAAAA
GACTTGACCGTGAAGAATCTGACAATATTTTAGATGCAGAGAGTAAAGGATTCAATTTTGATACGGAGGAAGGTGACAGTGTTATCCCAGGCTTCCTCAA
TTCAATAATTGGTATTCGACAAGGTGAAGTCAAGACTTTCCCACTTACGTTTCCTGAAACATGGAGACAAGAAAATCTACGTGGCCTTCATGCTCAATTT
TCTGTTGAATGCAAGGAATTATTTTATAGAGATTTGCCACAGTTAGATGATTCTTTAGCTGAGAAGCTTCTTGCTGGATGCACCTCCATACAGCAGGTCA
AGGATTTGTTATTAGAGAAATGTGTGGAGGTGGAGCAAACGGCGAGGGAGCAAGCAACTGATAATGCAATTCTTGACTTGCTTTGCAAGATGGTAGAGGT
TGACATTCCTCGGTCCTTGTTCGAGGAACAAGGTAGGCAGCTATATGGAGCTAAGCTTCTATCAATCCAGACAAGAGTGAAACTCAATGAAGAGCAGCTG
GCTAGACTATCAAGTCCTAAGGCAGTTACTGAGTACCTGGTAAACCAAGAGGAAAATATAGTAAGGGTGATAAAACAAAACCTTGCCGTTGGAGACATTT
TCAAACGTGAAAAATTGGAGTTTCCAACTGAAGATCTCATCAAAGGGGTGGAGAACTCCATTGCTGAGTTCAAACTTAATAAGCAAGACTATGACGAGGA
TCGCGTGAAGGAACAGGTTCAAGAAGTAATGGAAGGAGCTAAGGTGCTGGAGTGGTTGAGAGAACAGGCTGAGGTTCAGTACATCACCAAGTGA
AA sequence
>Lus10010250 pacid=23169957 polypeptide=Lus10010250 locus=Lus10010250.g ID=Lus10010250.BGIv1.0 annot-version=v1.0
MELCISSTTTTLLPAVRMVRKFGSNTSPCASASLRPLLLQLNRRDTCFLNFREIRLPVLRQCSSKISAASASSTSVAVEDEKDTLPAQLNLTETEEPNSR
VRLGVEVPSAVCEDCYKRVIKEFSKKAKVPGFRPGKSIPENILINYVGRQGFQKAVVESILQRTLPHALTSVPGFRPGKSIPENILINYVGRQGFQKAVV
ESILQRTLPHALTSERWYFKLRMVAPLSTQVNERALKDSVRIATSFSEIEKTYSSLKTLRYDILVDVAPELKWNPEDGYKNLKVVVEIDSDIDAQIASVQ
EFRRRHKSLGSMRIVTDRGLQVGDVAVLDISAKRLDREESDNILDAESKGFNFDTEEGDSVIPGFLNSIIGIRQGEVKTFPLTFPETWRQENLRGLHAQF
SVECKELFYRDLPQLDDSLAEKLLAGCTSIQQVKDLLLEKCVEVEQTAREQATDNAILDLLCKMVEVDIPRSLFEEQGRQLYGAKLLSIQTRVKLNEEQL
ARLSSPKAVTEYLVNQEENIVRVIKQNLAVGDIFKREKLEFPTEDLIKGVENSIAEFKLNKQDYDEDRVKEQVQEVMEGAKVLEWLREQAEVQYITK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G55220 trigger factor type chaperone ... Lus10010250
[exp]
0 1
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Lus10036468
[exp]
1.7 0.9664
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Lus10005553
[exp]
2.8 0.9698
AT5G66470 RNA binding;GTP binding (.1) Lus10014289
[exp]
4.2 0.9688
AT1G62780 unknown protein Lus10032229
[exp]
5.5 0.9465
AT4G32320 APX6 ascorbate peroxidase 6 (.1) Lus10002916
[exp]
5.7 0.9616
AT1G62780 unknown protein Lus10024592
[exp]
6.2 0.9452
AT3G59040 Tetratricopeptide repeat (TPR)... Lus10027829
[exp]
6.6 0.9229
AT1G12410 EMB3146, CLP2, ... NUCLEAR-ENCODED CLP PROTEASE P... Lus10004319
[exp]
6.7 0.9473
AT4G31850 PGR3 proton gradient regulation 3 (... Lus10026888
[exp]
8.7 0.9332
AT1G13270 MAP1B, MAP1C methionine aminopeptidase 1B (... Lus10035045
[exp]
9.9 0.9289

Lus10010250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.