Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01310 180 / 1e-57 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007915 [exp] 222 / 6e-74 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 206 / 2e-67 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1) Lus10033169 [exp] 141 / 1e-43 AT4G01310 238 / 3e-80 Ribosomal L5P family protein (.1) Lus10036391 [exp] 79 / 5e-20 AT4G01310 82 / 1e-20 Ribosomal L5P family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154600 [exp] 195 / 1e-63 AT4G01310 361 / 4e-127 Ribosomal L5P family protein (.1) Potri.014G089100 [exp] 156 / 2e-48 AT4G01310 311 / 3e-107 Ribosomal L5P family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00673 [flax] [poplar] Ribosomal_L5_C ribosomal L5P family C-terminus CL0652 [flax] [poplar] S24e_L23_L15e PF00281 [flax] [poplar] Ribosomal_L5 Ribosomal protein L5
Representative CDS sequence Show only first row Show all	>Lus10010251 pacid=23169960 polypeptide=Lus10010251 locus=Lus10010251.g ID=Lus10010251.BGIv1.0 annot-version=v1.0 ATGGAAGAGTTTTCCTATACCAACATTCACCAGGTTCCAAAAGTTGACGAGATTGTACTGAATTGTGGGATCGGAGAGGCTGCACAGAATGCCAAGGGAT TGGACGCAGCGGTCAACGATTTAGCTCTGATTGCAGGTCAGAGGCCAGTGAAAACACGTGCTAAAAACTTTGTTGCCACTTTCAAGATCAGAGAGGGTCA GGTAATGTGGGCATTTTTAGACAGGCTGATAAACTTGCGGCTACCTAGGACAAGGGATTTCCACGGACTGAATCCAAACAGCTTCGACGGACACAGGAAC TACATCGTCGGGATAAGAGAGCAGGGTGTATTCCTGGAGATCAAGTTCCATCTAGCCGGAAAGCAAGAGGGATGGATGTCTGCATCACAACCACTGCCAA CACAGATTAAGAAGCCCAGAAACTGCTGGCTTTGA
AA sequence Show only first row Show all	>Lus10010251 pacid=23169960 polypeptide=Lus10010251 locus=Lus10010251.g ID=Lus10010251.BGIv1.0 annot-version=v1.0 MEEFSYTNIHQVPKVDEIVLNCGIGEAAQNAKGLDAAVNDLALIAGQRPVKTRAKNFVATFKIREGQVMWAFLDRLINLRLPRTRDFHGLNPNSFDGHRN YIVGIREQGVFLEIKFHLAGKQEGWMSASQPLPTQIKKPRNCWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	0	1
AT1G50910			unknown protein		Lus10043058 [exp]	1.0	0.8847
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	3.5	0.8669
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	3.5	0.8544
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	3.5	0.8528
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	4.0	0.8329
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	4.5	0.8536
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	4.9	0.8391
					Lus10017807 [exp]	5.6	0.8074
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	7.1	0.8419
AT5G10320			unknown protein		Lus10000634 [exp]	7.3	0.8219

Compare expression of checked genes

Lus10010251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.