Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010256 pacid=23169937 polypeptide=Lus10010256 locus=Lus10010256.g ID=Lus10010256.BGIv1.0 annot-version=v1.0 ATGATTGCATCTTCATCTGCTGCTACCACTGCTACTTCTCCGCCGCTGCCACCGTGGTGTCTCCGACGAGAACCTATGTTGGTTGTCGGAACAAACATCG ATGTCTTCCTCGTCATTGACCACGATGGTGGGAGGAATCGGATCCGGAATGGGATAAGAAACGCAGGCTTGCTATTCGCAGTTCGCAACGGTGGATGGGA GTTAGTTGACGTTATATCCCGGAGGAAAGATCTCATCACTTCTGAAACCGGCCGGTTTCTGAAGGAGATGATAATTCAGGAAGATCGTTTTTTTAATCTA AAGGAAGAAGAAAATCGACGTCTTCTGTTTGCTAGGTTATCGGTAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10010256 pacid=23169937 polypeptide=Lus10010256 locus=Lus10010256.g ID=Lus10010256.BGIv1.0 annot-version=v1.0 MIASSSAATTATSPPLPPWCLRREPMLVVGTNIDVFLVIDHDGGRNRIRNGIRNAGLLFAVRNGGWELVDVISRRKDLITSETGRFLKEMIIQEDRFFNL KEEENRRLLFARLSVSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010256 [exp]	0	1
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031189 [exp]	14.8	0.7576
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	18.2	0.7133
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10010220 [exp]	50.6	0.6088
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	54.4	0.6557
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	58.9	0.6746
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	80.0	0.6623
					Lus10020479 [exp]	80.5	0.6083
AT1G52540			Protein kinase superfamily pro...		Lus10019988 [exp]	102.4	0.5883
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	112.1	0.6533
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	163.8	0.6070

Compare expression of checked genes

Lus10010256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.