Plant FIBer expression Database

Lus10010257 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49800 37 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019310
[exp]
58 / 3e-12 AT4G37290 56 / 1e-11 unknown protein
Lus10010255
[exp]
56 / 2e-11 AT4G37290 54 / 6e-11 unknown protein
Lus10011512
[exp]
52 / 4e-10 AT4G37290 57 / 3e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G142900
[exp]
54 / 1e-10 AT4G37290 44 / 4e-07 unknown protein
Potri.016G015600
[exp]
53 / 2e-10 AT4G37290 45 / 2e-07 unknown protein
Potri.007G049400
[exp]
51 / 9e-10 AT4G37290 46 / 5e-08 unknown protein
Potri.007G049500
[exp]
50 / 1e-09 AT4G37290 48 / 1e-08 unknown protein
Potri.006G008066
[exp]
47 / 2e-07 AT2G23270 45 / 2e-06 unknown protein
Potri.006G008132
[exp]
41 / 2e-05 ND /
Potri.001G299800
[exp]
37 / 0.0004 AT1G49800 44 / 1e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10010257 pacid=23169954 polypeptide=Lus10010257 locus=Lus10010257.g ID=Lus10010257.BGIv1.0 annot-version=v1.0
ATGGCCAGACCAATTAGATTCGTTGGCATGTTGATTACAGCATGGGTACTCATGATGCAGCTGCTGATGATCATGATCATGTTGGGTTCCGGAACAGAGG
CGGCTCGGCCTTTTATCATCCTGAAGAATTCTGATGATCAATTGGAGAGCAGCGGGAATTGGTGGGCGGACGCGGTTGTCATTGAGAGGTTGGCTATCGG
AGCAATCAAGCAATCGGGTCCCAGCCCAGGCGTCGGGAATAGCTTTACAAATTCGCTCAATGATGGTCCCAGTCCTGGTGCAGGACACTGA
AA sequence
>Lus10010257 pacid=23169954 polypeptide=Lus10010257 locus=Lus10010257.g ID=Lus10010257.BGIv1.0 annot-version=v1.0
MARPIRFVGMLITAWVLMMQLLMIMIMLGSGTEAARPFIILKNSDDQLESSGNWWADAVVIERLAIGAIKQSGPSPGVGNSFTNSLNDGPSPGAGH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010257
[exp]
0 1
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Lus10013595
[exp]
1.0 0.9950
AT2G42360 RING/U-box superfamily protein... Lus10002194
[exp]
2.4 0.9939
AT3G26770 NAD(P)-binding Rossmann-fold s... Lus10032192
[exp]
3.7 0.9940
AT3G12500 PR-3, PR3, CHI-... PATHOGENESIS-RELATED 3, basic ... Lus10041830
[exp]
3.9 0.9929
AT4G37290 unknown protein Lus10010255
[exp]
6.6 0.9929
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Lus10021311
[exp]
7.7 0.9882
AT3G12500 PR-3, PR3, CHI-... PATHOGENESIS-RELATED 3, basic ... Lus10000193
[exp]
8.4 0.9833
AT3G61510 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCY... Lus10036396
[exp]
8.4 0.9906
AT1G80450 VQ motif-containing protein (.... Lus10026247
[exp]
8.5 0.9873
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Lus10034817
[exp]
8.8 0.9896

Lus10010257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.