Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52150 243 / 1e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 137 / 3e-37 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G60000 110 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 108 / 8e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 107 / 1e-26 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 95 / 1e-21 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G01080 88 / 3e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22760 88 / 2e-18 PAB3 poly(A) binding protein 3 (.1) AT2G35410 81 / 7e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 82 / 9e-17 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041602 [exp] 370 / 3e-128 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 139 / 1e-37 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 134 / 6e-36 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10002222 [exp] 118 / 3e-30 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 116 / 1e-29 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023723 [exp] 116 / 4e-29 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10026514 [exp] 110 / 2e-27 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 100 / 1e-22 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10037265 [exp] 89 / 2e-19 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065900 [exp] 285 / 5e-95 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 130 / 9e-35 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 127 / 2e-33 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 126 / 2e-33 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 124 / 8e-33 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G127200 [exp] 124 / 2e-32 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G065600 [exp] 120 / 2e-31 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G141300 [exp] 106 / 6e-26 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 106 / 8e-26 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 105 / 9e-26 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10010262 pacid=23169958 polypeptide=Lus10010262 locus=Lus10010262.g ID=Lus10010262.BGIv1.0 annot-version=v1.0 ATGGCAACTTTCTCAACATCTCTGCTCCCGCCTTTACCCACCACAACTTCAAAACTCCAATTTCCCAAGAAACCCACTGCCCAATTCCTAATTCAAACCA ACCAAACTGACACTCAACGTGTCTTGCCACAATTAAGACTGCTTATCAACTCCTCACGGCTTCGTGCGGTAGCTGAAGTAGCCGCCCCGCCAGCTGACCC ATCCTCACCAGCTTCCAGAAGGCTCTACGTTGGAAACATTCCTAGGAACTTGAAGAACGACGAGCTCCGCAAAATTGTTGATGAGCATGGAGCTGTCGAC AAAACTGAGATTATGTTTGATAAATACTCAGGTAGGAGTCGTCGGTTTGCATTTGTGACAATGAAGACTATCGAGGATGCTAATGCTGCAATTGAGAAAC TGAATGGCACTGAAATTGGTGGACGTGAGATCAAAGTTAACATTACAGAGAAGCCCTTGGCACAAGTAGATTCCCCACTCTTGCAATCTGATGAAACCCC TTTCATTGATAGCCCATACAAGGTTTATGTTGGGAATCTTGCCAAAAAAGTTACCACGGATATACTCAAGACTTTCTTTTCTGACAAGGCAAATGTTATG AGTGCAAAGGTTTCTCGAGTCCCAGGAACTTCGAAATCAAGTGGGTTTGGATTCGTCACATTCTCGTCAGATGAGGATGTACAAGTTGCCATCTCCTCTT TCAACAATTCTGGCCTAAACGGATCCCATGTCCACCTTGGCATTCTTGGGTGCTTTGTTTGGGGGCCTAATGGAAGCCCTCCCCTAGGGTATGGGCCAAC CAAGATTCAACCCCCTTCCCGATCTACTTTAAGGTCCATCTTCAACCCACATAACCCTGGGAATGAGTATATCTGGCCATGGATCTATGCCCAAGAGCAA ATCAACCTCAGATGTCTCAAGAGATGGTTGGCCAGCCCAGCAAGGGCCGCCCTTCCCATGCCGATCCATCATGGACCTTTTAACGGACAACCTCTAGCAC CTAGTAGACAGATCATTTCTCCCATCTGGTGCTTACCAACCGATCCCAGTGTTCATCTACATTCGGTAAAGAGCGTCTCCCCAATGTCCAGACCTGTCCC TAGGCCCTATGGACCAAGACGCCGTAGTATGACCCTAGCGTCTTCGAAGCCAATGCCTGTGCCATGCCCGACTGTGACCAGCTCAGGATGTTGCTCCTAA
AA sequence Show only first row Show all	>Lus10010262 pacid=23169958 polypeptide=Lus10010262 locus=Lus10010262.g ID=Lus10010262.BGIv1.0 annot-version=v1.0 MATFSTSLLPPLPTTTSKLQFPKKPTAQFLIQTNQTDTQRVLPQLRLLINSSRLRAVAEVAAPPADPSSPASRRLYVGNIPRNLKNDELRKIVDEHGAVD KTEIMFDKYSGRSRRFAFVTMKTIEDANAAIEKLNGTEIGGREIKVNITEKPLAQVDSPLLQSDETPFIDSPYKVYVGNLAKKVTTDILKTFFSDKANVM SAKVSRVPGTSKSSGFGFVTFSSDEDVQVAISSFNNSGLNGSHVHLGILGCFVWGPNGSPPLGYGPTKIQPPSRSTLRSIFNPHNPGNEYIWPWIYAQEQ INLRCLKRWLASPARAALPMPIHHGPFNGQPLAPSRQIISPIWCLPTDPSVHLHSVKSVSPMSRPVPRPYGPRRRSMTLASSKPMPVPCPTVTSSGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	0	1
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	2.0	0.8835
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	3.0	0.8924
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	3.5	0.8934
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	6.2	0.8598
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	6.7	0.8741
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	7.9	0.8954
AT3G55140			Pectin lyase-like superfamily ...		Lus10030313 [exp]	9.4	0.8576
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10025822 [exp]	11.1	0.8384
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	11.2	0.8615
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	12.3	0.8749

Compare expression of checked genes

Lus10010262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.