Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37250 707 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 656 / 0 RLK receptor-like kinase (.1) AT4G34220 506 / 3e-169 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 503 / 5e-168 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 422 / 2e-136 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 355 / 1e-111 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 349 / 2e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 315 / 4e-96 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 271 / 1e-80 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 246 / 2e-71 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030333 [exp] 1224 / 0 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 775 / 0 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 768 / 0 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 302 / 1e-91 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 301 / 2e-91 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014098 [exp] 301 / 2e-90 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 295 / 3e-89 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 291 / 3e-87 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 270 / 2e-84 AT5G67280 275 / 8e-87 receptor-like kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142300 [exp] 861 / 0 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 860 / 0 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 649 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 382 / 2e-121 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 369 / 1e-116 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 303 / 5e-92 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 301 / 3e-91 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 232 / 3e-66 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G176900 [exp] 215 / 1e-59 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 214 / 7e-59 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010263 pacid=23169941 polypeptide=Lus10010263 locus=Lus10010263.g ID=Lus10010263.BGIv1.0 annot-version=v1.0 ATGAGCCGCTACCAAGTTGGTCTTCTCCAACTTGAGTTTCTGTTTCTCCTTCTTCTTCAGATTTGTTCTGCAATCAACACTGATGGAATTCTCTTACTCT CCTTCAAGTTCTCAATCCTCAGTGATCCTCTCAACATCCTCCAGGGCTGGAACTACTACGACCCAACTCCCTGCTACTGGACTGGCGTCGTTTGCTCCTC TCCCGCTGGTATCGACGGCTCCCTTGCTCGAGTCGTAGCCTTATCCCTTCCCAATTCTCAGCTACTCGGCTCCATCCCTGCTGATCTAACCTCCATTGAG CATCTCCATACCCTCGATCTCTCCAACAACTCCCTAAATGGTTCTCTCCCTACTACCATTTTCAACGCTACCCAGCTCCGCTCTCTCGATTTCTCCAATA ACCTATTCTCCGGTCAAATCCCGGATACCGTTGCGCAGTTACACAGCCTTGTCATGCTTAATTTGTCTGACAATGCATTGACTGGTAATTTGCCTCTTAA CATCAGTTCCCTCCAAAATCTGACGGAGCTCTCTCTCACTAATAATTACTTCACCGGCGGCCTTCCTTCTGGGTTTAATTCCGTTCAAGTTCTCGACCTC TCATCCAATCTTATCAACGGATCTCTGCCTCCTGATTTTGGTGGTAAAAGACTCCGTTACTTCAACATCTCCTACAACAGGCTTTCCGGCTCAATTCCCC AAGAATTTGCCGCCGAAATCTCGGGTAATGCCACGTTGGATCTTTCTTTCAACAATCTCACTGGGGAAATTCCTGATTCCACAGTTTATTTCAATCAGAA ATCCGGTTTTTTCTCCGGCAACTCTGACCTCTGCGGCCGCCTGACTTTTAACCCCTGTCCAATTCCTTCTAGTCCTCTTGTAAATTCCTCAGCCCAAACT TCGCCTCCTGCACTTGCCGTGATTCCAAAGCCGGCCACCTCAGGCCATGCCGATTCTGCGAACAAAGTACAGAGCAGCAACAGACTGAGAACGGGGACTA TCGTCGGGATCGTACTAGGCGATGTGGCCGGAGTCACGATTCTGTTCGTTGTGTTCTTCTATGTATATTACTTCATTCAGAAAAGAAAGAAGAAGAAGAA GATCGACACGGAAATACTAAACGGTGTTGGACTCGCCCAGGATGATTCAACTTCGTCATCATCCTCCTGTGAATCTAGAGGGTTTACGAGATGGTCTTGC CTGCGGAAGAAGAGCGAGAATTACGAAGATGGTTCCGATTCGTCCACTTACGACACCTACGAGCTGGACTCAAAATCAGCCGCTGCCATCGATCAGAGCA GCAGCAACAGCAATGACGCGAAAAAAGGGACACTGGTGAGCGTCGACAGCGAGAAGGAGCTGGAACTCGAGTCTCTCCTACGAGCTTCGGCTTACATTCT GGGAGCCACCGGGTCAAGCATAGTGTACAAGGCGGTGCTGGAAGACGGAACTTCTCTGGCCGTCCGCAGAATTGGGGAAACGCACGTCGAGCGGTTTAGG GATTTCGAGAACCAGGTCAGGATAATATCCAGATTGGTCCACCCGAATCTGGTCCGGATCCGCGGGTTCTATTGGGGACCCGAGGAAAAGCTCATAATCT ACGATTTCGTCCCCAACGGCAGCCTCGCCAACGCTCGTTACAGGAAAGCCGGAGGATCGTCGCCGTGTCGTTTACCGTGGGAGTCCCGGCTGAAGATAGC GAGAGGAGTAGCCCGTGGGCTTTCCTTCCTTCACGATAAGAAGCACGTCCACGGAAACTTAAAGCCCAATAATATTCTATTGGGCTCAGATATGGAGCCT AAGTTAGGAGACTTTGGGCTCGAGAAGCTCATCACCGGTGACATAAGCTCGAAAGCTGGTAGTTCGGCACGGAATTTCGGGAGCAAGAGGTCAACGGCGT CACGAGAGAGTTTTCAGGACTTGTCATCCACGGGGCCAGGCCCTAGTCCTAGCCCCTGCTCTGTCGGAGGGTTGTCTCCGTATCATGCACCCGAATCGTT CCGAAGTATCAAGCCCAACCCAAAGTGGGATGTGTATTCGTTTGGGGTGATATTGCTTGAGCTGCTTACAGGAAAGGCCATAATTGTAGACGAGACGGGT CAAGGAAGCAATGGGCTTGCGGTAGAGGACAAGGCCCATGCATTGCGTATGGCTGATGTGTCGATTCGAGCTGATGTCGAAGGGAAAGAAGAGGCTTTGT TGGCATGTTTTAAGTTAGGTTATAGTTGTGCATCTACAATCCCTCACAAAAGACCAAACATGAAAGAAGCTTTGCAAATTCTTGACAAGATCCCTACGAC ATCTTTTGCTTTTTCGGTATTCCTTTATGGACTATAA
AA sequence Show only first row Show all	>Lus10010263 pacid=23169941 polypeptide=Lus10010263 locus=Lus10010263.g ID=Lus10010263.BGIv1.0 annot-version=v1.0 MSRYQVGLLQLEFLFLLLLQICSAINTDGILLLSFKFSILSDPLNILQGWNYYDPTPCYWTGVVCSSPAGIDGSLARVVALSLPNSQLLGSIPADLTSIE HLHTLDLSNNSLNGSLPTTIFNATQLRSLDFSNNLFSGQIPDTVAQLHSLVMLNLSDNALTGNLPLNISSLQNLTELSLTNNYFTGGLPSGFNSVQVLDL SSNLINGSLPPDFGGKRLRYFNISYNRLSGSIPQEFAAEISGNATLDLSFNNLTGEIPDSTVYFNQKSGFFSGNSDLCGRLTFNPCPIPSSPLVNSSAQT SPPALAVIPKPATSGHADSANKVQSSNRLRTGTIVGIVLGDVAGVTILFVVFFYVYYFIQKRKKKKKIDTEILNGVGLAQDDSTSSSSSCESRGFTRWSC LRKKSENYEDGSDSSTYDTYELDSKSAAAIDQSSSNSNDAKKGTLVSVDSEKELELESLLRASAYILGATGSSIVYKAVLEDGTSLAVRRIGETHVERFR DFENQVRIISRLVHPNLVRIRGFYWGPEEKLIIYDFVPNGSLANARYRKAGGSSPCRLPWESRLKIARGVARGLSFLHDKKHVHGNLKPNNILLGSDMEP KLGDFGLEKLITGDISSKAGSSARNFGSKRSTASRESFQDLSSTGPGPSPSPCSVGGLSPYHAPESFRSIKPNPKWDVYSFGVILLELLTGKAIIVDETG QGSNGLAVEDKAHALRMADVSIRADVEGKEEALLACFKLGYSCASTIPHKRPNMKEALQILDKIPTTSFAFSVFLYGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	0	1
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	1.4	0.8971
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	2.8	0.8947
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	7.4	0.8393
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	8.8	0.8680
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10040694 [exp]	12.5	0.8627
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040201 [exp]	14.7	0.8018
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	16.9	0.8148
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	17.1	0.8561
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	17.3	0.8585
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	18.7	0.8455

Compare expression of checked genes

Lus10010263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.