Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19420 543 / 0 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) AT3G50110 472 / 7e-163 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT5G39400 125 / 6e-32 ATPTEN1 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) AT5G07740 50 / 3e-06 actin binding (.1) AT2G25050 49 / 5e-06 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G58160 44 / 0.0003 actin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002826 [exp] 524 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10027876 [exp] 522 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10035830 [exp] 47 / 2e-05 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 47 / 4e-05 AT5G58160 608 / 0.0 actin binding (.1) Lus10003482 [exp] 46 / 7e-05 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 45 / 0.0001 AT5G07740 723 / 0.0 actin binding (.1) Lus10003956 [exp] 43 / 0.0006 AT1G31810 731 / 0.0 Formin Homology 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047900 [exp] 577 / 0 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.001G302000 [exp] 534 / 0 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.009G098000 [exp] 518 / 0 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.017G089700 [exp] 130 / 2e-33 AT5G39400 555 / 0.0 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) Potri.012G067900 [exp] 56 / 3e-08 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 55 / 7e-08 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 45 / 6e-05 AT5G58160 598 / 0.0 actin binding (.1) Potri.018G108000 [exp] 45 / 6e-05 AT5G58160 600 / 0.0 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10010265 pacid=23169961 polypeptide=Lus10010265 locus=Lus10010265.g ID=Lus10010265.BGIv1.0 annot-version=v1.0 ATGCAGGGAAAATACAAAGTTTACAATTTGTGCTCAGAGAGATTATATGATGCATCACGGTTTGAGGGGAAGGTAGCTTGTTTTCCGTTTGATGACCATA ATTGCCCTCCCCTACAACTGATAACATTGTTTTGTCAAAGTGCATACTCATGGCTAAAAGAGGATATTGAAAATGTTGTGGTAGTCCATTGCAAAGCTGG TATGGGAAGGACAGGACTAATGATCTGTAGTCTTCTTCTATACCTTAAGTTCTTTCCGACTGCTGATGAGGCCATTGATGTTTTCAACCAGAAAAGATGC GTGGATGGGAGGGCTTTAGTTCTCCCAAGTCAGATTAGGTATGTCAAATACTTTGACCGCGTCTTGACATACTTCAATGAGGAAATTCAGCTTGGACGAA AGTGCATGCTTCGAGGTTTTCGGCTTCATAAATGCCCTTACTGGATAAGGCCTTCGATCACCATCTCCAACCATAGTGGAGTTCTATTCTCGACAAGAAA GCATCCGAAAACGAAGGATTTAATGCCAGAAGATTTTTGGATCAGTGCCCGGAAGAAAGGAATTATTGTGTTTGCACTTCCCGGGGAGCCTGGCCTTACC AAGTTGGCTGGGGACTTCAAGATCCAGTTTCATGACCGCCAAGGAGACTTCTATTGTTGGTTGAATACAACAATGACAGAAAACAGGAAAACATTGACAG GCGATGAACTAGATGGCTTCAACAAGAGGAAACTGCCTTCTCCGGGATTTGAAGTTGAAATTGTAATGATAGACTATGATGGCACTTCCATGGCAAAGAC AAAAGCTGATTCGAACACCAATGCTTCAAGCAGTGGTACCAACTCAAACTCTGATGCATCAAGTGCTGGAACTGCCACGAAGTCCAAACAAAAGAAAGCA CCAGAGAAGGAAGAAGACGATGTGTTCTCCGACAGCGATGGAGAGGAAACTGATTCGAACAAGAAGAAGCAGCAACAGCACGGTCCAGGTGAAGCTGCTC AGGCTAGTGGTCAAATGGGTAAATCCACAGCAGAACAAATGACCAAATTACATCAAGCTACGGAGCAGATGAGTGTTAGTAGCAGCAGGGACTCATGTCA ACCAAATGCAACCAAAGAGCAACCCACTAATGCAGTTCAGACACAACCGACAAGCGTAGAAACACCTAAGATGGAGTCAGGGGTCAGTGATATTAAGGCA ATGGCTGCTGATGCTTCGGTTTTCACTTTCGGGGACGAAGATGAATTCGAAAGTGATTGA
AA sequence Show only first row Show all	>Lus10010265 pacid=23169961 polypeptide=Lus10010265 locus=Lus10010265.g ID=Lus10010265.BGIv1.0 annot-version=v1.0 MQGKYKVYNLCSERLYDASRFEGKVACFPFDDHNCPPLQLITLFCQSAYSWLKEDIENVVVVHCKAGMGRTGLMICSLLLYLKFFPTADEAIDVFNQKRC VDGRALVLPSQIRYVKYFDRVLTYFNEEIQLGRKCMLRGFRLHKCPYWIRPSITISNHSGVLFSTRKHPKTKDLMPEDFWISARKKGIIVFALPGEPGLT KLAGDFKIQFHDRQGDFYCWLNTTMTENRKTLTGDELDGFNKRKLPSPGFEVEIVMIDYDGTSMAKTKADSNTNASSSGTNSNSDASSAGTATKSKQKKA PEKEEDDVFSDSDGEETDSNKKKQQQHGPGEAAQASGQMGKSTAEQMTKLHQATEQMSVSSSRDSCQPNATKEQPTNAVQTQPTSVETPKMESGVSDIKA MAADASVFTFGDEDEFESD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10010265 [exp]	0	1
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	5.1	0.6466
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	11.5	0.6407
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	34.5	0.6203
AT1G71150			unknown protein		Lus10021799 [exp]	79.0	0.5549
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	95.7	0.5463
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	135.7	0.5292
AT3G23910			unknown protein		Lus10016653 [exp]	179.0	0.4915

Compare expression of checked genes

Lus10010265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.