Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50110 119 / 3e-31 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT3G19420 108 / 2e-27 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002826 [exp] 123 / 2e-32 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10027876 [exp] 122 / 5e-32 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302000 [exp] 138 / 7e-38 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.009G098000 [exp] 134 / 1e-36 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.007G047900 [exp] 124 / 6e-33 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010266 pacid=23169944 polypeptide=Lus10010266 locus=Lus10010266.g ID=Lus10010266.BGIv1.0 annot-version=v1.0 ATGATGGATTCTGATCCTGTCGTTTCATCCTCGTCATCTGAACCTCCTCCTGGAAAGACCCCGTCTATTACAGAGTCTCCTGTCATGGCTTCCAATGTTA AGTCTTCTGATAAAGGTCCTAAACCCTCTGTTTCTACTGGAATTAAGCCTGATCATTTATCTGAAGCAGCAGAATCCACAAGTGCTGAATCCAACGATGC GAATACAAGTTTGCCTGAACCGAGGCCACCACAAGACTCCCTGACTGCAAATTCTGGTGCTTCAACACTTACACGTATTACTAGTGGGCTGGGTCTGCGT CTTTCAGCAATGGCTTCTGGATCAGAGGAGTCTGCTAAAGGAAGTGAAACCGCTGGACAGAGTGGTGTTCTTGAGTCACTGACAAAGGGTATAGTTGACT CATCTCGTAGTGCAGTGAAGGCTATCCAGGAAGGCGGATTTGATTTGGATATGGCTTATATTACTGAGAATATAATTGCTATGGGGTTTCCGGCTGGTGA TTTGAGCTCTGGGTTCTTTGGGTTCTTTGAGGGATTCTATCGGAATCACATGGAAGAAGTGATCAGATTTTTTGAGAGTCACCACAAGGTAATATACATT AAACTTATATGGTGCGGCCTTGTGACATAA
AA sequence Show only first row Show all	>Lus10010266 pacid=23169944 polypeptide=Lus10010266 locus=Lus10010266.g ID=Lus10010266.BGIv1.0 annot-version=v1.0 MMDSDPVVSSSSSEPPPGKTPSITESPVMASNVKSSDKGPKPSVSTGIKPDHLSEAAESTSAESNDANTSLPEPRPPQDSLTANSGASTLTRITSGLGLR LSAMASGSEESAKGSETAGQSGVLESLTKGIVDSSRSAVKAIQEGGFDLDMAYITENIIAMGFPAGDLSSGFFGFFEGFYRNHMEEVIRFFESHHKVIYI KLIWCGLVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50110		PTEN2B, ATPEN3	phosphatase and TENsin homolog...		Lus10010266 [exp]	0	1
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	9.2	0.9330
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	9.3	0.9259
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	12.2	0.9190
AT2G07820			unknown protein		Lus10015035 [exp]	14.3	0.9210
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	15.0	0.9122
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	15.3	0.9186
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	23.7	0.9153
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	25.8	0.9134
AT5G11560			catalytics (.1)		Lus10022143 [exp]	26.5	0.9094
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	28.6	0.9106

Compare expression of checked genes

Lus10010266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.