Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67230 566 / 0 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 550 / 0 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G27600 118 / 6e-29 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT2G37090 64 / 8e-11 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041601 [exp] 871 / 0 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10011500 [exp] 406 / 4e-140 AT5G67230 379 / 6e-130 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032817 [exp] 112 / 1e-26 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10007692 [exp] 110 / 8e-26 AT1G27600 498 / 2e-176 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10033785 [exp] 94 / 5e-23 AT4G36890 84 / 3e-20 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019917 [exp] 67 / 7e-12 AT2G37090 417 / 3e-146 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026487 [exp] 61 / 7e-10 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10015069 [exp] 50 / 2e-06 AT2G37090 236 / 9e-76 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019325 [exp] 0 / 1 AT5G67230 335 / 5e-127 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047500 [exp] 620 / 0 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G141500 [exp] 614 / 0 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G107300 [exp] 117 / 1e-28 AT1G27600 477 / 1e-168 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.006G240200 [exp] 105 / 2e-24 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.006G131000 [exp] 77 / 4e-15 AT2G37090 439 / 7e-155 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.016G086400 [exp] 75 / 2e-14 AT2G37090 473 / 4e-168 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03360 [flax] [poplar] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Lus10010268 pacid=23169945 polypeptide=Lus10010268 locus=Lus10010268.g ID=Lus10010268.BGIv1.0 annot-version=v1.0 ATGATGAAGCTCTCCGCACTTCAGCAGAGCTACCTGAGCCGCCGCCCTGGTAGTTTCAGGGGATCTGCTCCTCTAGATTCGTCTGCTGACAGCACGATTA AGTCTTCGTCGGCAGTTTTCTGGCTTGTCCTCCATGGACTATGCTGCCTCATCAGTCTCATCCTCGGATTCCGCTTTTCCCGCCTGGTCTTTTTCTTCCT TTTCTCCACTTCCGCCATCACTACCAACACCAATCACTTCATGGCCCCGTTTCGCCAGCTTACTACCACTGCTACCGTCGCCGACCTGCCACTTAATTTT CCGTCCAACCCTGTCGCTAACGGCGGTGGGGTTCCCGTGGTCAACAGGACGGTGAGCTCTTCTAGAGTCGTGGTCGGGCGTCACGGGATCCGGATCCGGC CATGGCCTCATCCGGACCCGATCGAGGTAATGAAGGCGCATCAGATAATTGAGAGAGTGCAGAGGGAGCAGCGGATTCAGTTCGGAATCAAGAACCCCAG GACCGTCATCGCAGTGACACCTACCTACGTACGGACCTTCCAGACACTGCATCTGACCGGCGTTATTCACTCGCTGATGCTCGTCCCTAACGACGTCGTT TGGATCGTTGTGGAGGCCGGCGGAGTGAGTAATGAGACCGCCGCGATCATTTCGAAGTCGGGCGTGAAGACTATCCACATTGGGGTTGATGAGAAAATGC CTAACACGTGGGAAGGGCGCCATAAATTGGAGACCAAAATGCGGATTCGTGCTTTGAGGGTTGTAAGGGAGAAGAAGCTGGATGGGATTGTGATGTTCGC AGACGATAGTAATATGCACAGTATGGAACTTTTCGACGAGATTCAGAATGTGAATTGGTTTGGTGCGGTTTCTGTTGGTATTCTTGCACATTCTGGTGGT TCTGAGGAGTTATCATCGGCTGATGTTAACAAAGATGTAGAAGAGAAGGAGAAGCAGGGAATGCCTGTTCAAGGTCCTGCCTGTAATGCATCTGACAAGT TGGCTGGTTGGCACACCTTTGATTCGCAGCCATATGAAGGGAACATCGCCGTTTATATTGACGATAGAGCAATTGTGCTGCCTGGTAGGCTGGAGTGGGC TGGATTTGTGATTAATTCAAGATTGCTTTGGCAAGATGTTGAAGATAAGCCTCAATGGTTTAAGGAATTAGATACAATTGTTGAGGATGTAGAGTCTCCT TTATCTCTATTAAAGGATTCTTCAATGGTGGAACCACTTGGCAGCTGTGGCAGACAAGTGCTACTTTGGTGGCTCCGAGTTGAAGCTCGTACAGACAGCA AGTTTCCTGCTGGGTGGATAATAGACCCGCCGCTGGAGATTAGTGTGGCATCAAAGCGAACGCCGTGGCCAGATGCTGCCCCTGAACTCCCAAGCAAGGA GCAGGAGGCGGTAAGCAACATGGAAGAGCCACATCCTATAAAGCACATAAAGACGCGATCATCTAGATCTAAGCGCAGAAGCAAGAGGAAGCATGAACCC AGAACCGTGGTGGATGCACAGGTCACCACAAAGCATTCTGAACAACTCTAG
AA sequence Show only first row Show all	>Lus10010268 pacid=23169945 polypeptide=Lus10010268 locus=Lus10010268.g ID=Lus10010268.BGIv1.0 annot-version=v1.0 MMKLSALQQSYLSRRPGSFRGSAPLDSSADSTIKSSSAVFWLVLHGLCCLISLILGFRFSRLVFFFLFSTSAITTNTNHFMAPFRQLTTTATVADLPLNF PSNPVANGGGVPVVNRTVSSSRVVVGRHGIRIRPWPHPDPIEVMKAHQIIERVQREQRIQFGIKNPRTVIAVTPTYVRTFQTLHLTGVIHSLMLVPNDVV WIVVEAGGVSNETAAIISKSGVKTIHIGVDEKMPNTWEGRHKLETKMRIRALRVVREKKLDGIVMFADDSNMHSMELFDEIQNVNWFGAVSVGILAHSGG SEELSSADVNKDVEEKEKQGMPVQGPACNASDKLAGWHTFDSQPYEGNIAVYIDDRAIVLPGRLEWAGFVINSRLLWQDVEDKPQWFKELDTIVEDVESP LSLLKDSSMVEPLGSCGRQVLLWWLRVEARTDSKFPAGWIIDPPLEISVASKRTPWPDAAPELPSKEQEAVSNMEEPHPIKHIKTRSSRSKRRSKRKHEP RTVVDAQVTTKHSEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10010268 [exp]	0	1
AT4G33440			Pectin lyase-like superfamily ...		Lus10003589 [exp]	2.8	0.9424
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	5.7	0.9556
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	6.9	0.9518
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	8.9	0.9204
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	9.2	0.9458
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	10.1	0.9493
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10022868 [exp]	10.4	0.9284
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	11.7	0.9466
AT3G08490			unknown protein		Lus10029519 [exp]	13.1	0.9342
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	13.4	0.9463

Compare expression of checked genes

Lus10010268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.