Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02100 624 / 0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G47440 613 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62570 564 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02650 496 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 78 / 1e-14 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 69 / 6e-12 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036335 [exp] 838 / 0 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10002438 [exp] 674 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 81 / 1e-15 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019041 [exp] 73 / 3e-13 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 73 / 5e-13 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031042 [exp] 50 / 6e-06 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019560 [exp] 44 / 4e-05 ND 39 / 3e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197300 [exp] 747 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.014G122300 [exp] 730 / 0 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 75 / 9e-14 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.009G050200 [exp] 71 / 2e-12 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 69 / 8e-12 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.006G047700 [exp] 69 / 9e-12 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10010272 pacid=23169546 polypeptide=Lus10010272 locus=Lus10010272.g ID=Lus10010272.BGIv1.0 annot-version=v1.0 ATGGCCGCCACGTCTCCTCCTCCCCACGGCGGCCCTGAGAGGAAGCACTGGTGGCTTACCAATCGCAAGATTGTCGATAAGTATGTCAAGGACGCCAGGA GTTTGATAGCCAGCCAAGAGCAAGGGGACGTGGCTTCCGCATTGAACCTGCTCGATGCTGCTCTATCTCTCTCGCCCCGGTTCGAGCCTGCGCTTGAGCT CAAGGCTAAGTCGTTGCTCTACCTCCGTAGATTCAAGGACGTCGCCGATTTACTCCAGGATTATATTCCGAGCTTCAAAATCGCCTCCGATGAATCTTCC ATTTCTTCCTCTTCTTCTTCTTCCTCTTCGTCTTCGTCTTCTTTATCTTCTTCCTCGTCGGATGTTTCCTCCCGAGCTAAGCTTCTACAGTCCGATAATT CGTCGTCCGACTTCTCCGAGGGCCGAGATCCGAGCTTCAAGTGCTTCTCTGTTTCTGATTTGAAGAAGAAAGTAATGGCTGGACTCTGTAAAAACTGCGA CAAGGAAGGGCAATGGAGGTATTTGACATTGGGCCAAGCTTGTTGCCATTTGGGCCTAATGGAGGATGCAATGGTCCTTCTCCAGACCGGGAAACGCCTC TCCACCGCCGCATTCCGTCGCCAGAGCATCTCATGGTCCGAGGACAGCTTCTCACTCTCCAACTTCCCAATCTCCGGCGACTCATCCGCACCCCCAACTC CGCCGCGGAACATAACAGAAACGGAAAACATAACACATCTACTCGCACACATCAAGCTCCTGCTCCGACGCCGCGCGGCCGCAATCGCCGCATTGGACGC TGGCCTGTACGCGGAGGCAATCCGGCACTTCTCGAAGATCGTCGACGGTAGGAGAGGAGCTCCGCAAGGATTCCTCGCTGAATGCTATATGCACAGGGCG TTCGCGTACAAATTCGCTGGCCGAATTGCAGAAGCAATTGCGGATTGCAACAAGACTCTGGCGTTAGATCCTTCTTCGATCCAAGCACTTGAGACCAGAG CTTCGTTGCTCGAAACGATCCGGTGCTTGCCGGACAGTCTCCACGATCTGGAACACCTGAAGCTTCTATACAATTCGATCCTCAGAGATCGGAAGCTTCC AGGACCGGCCTGGAAGCGGCAGAATGTAACGTATAGAGAGATTCCGGGGAAGCTTTGTGCGTTGAGCACGAAGATTCAGGCGCTGAAAGAGAGAGTCGCC GCCGGTGAGACTGGGAACGTCGATTACTACGGTTTGATCGGATTGAGGAGGGGATGCTCCAGATCCGAGCTGGAGAGAGCTCATCTGTTGCTCGTGCTCA GGCATAAGCCGGATAAGGCGACGAACTTTATCGATCGGTCTGAGATCGCCGATCTTCGAGATCTGGATTCCATCAAGGATCGGGCGAAGATGTCAGCCTT GTTGCTCTATAGATTGATCCAGAGAGGCTACTCGACCGTGATGAGGAATATTATCGACGAGGAGGCCGCTGAGAAGCAGCGAAAGAAAGATGCCGCCAAT GCTGCCACCGCCGCTGCAGCTGCGGCGGCTGTACATGCCGCCGTGGAGCCAGTGGAATCTAAGGCGGCGACGTCTTCTGGAAGCAGTAATCCGGCGGTGT TCCAAGGAGTGTTCTGCCGGGATCTTACGGCGGTGGGAAGCCTGCTTTCTCAAGTCGGGTTCAACCTCCCGATTCCGGTGAAGTACCAGGCATTGAGCTG CTGA
AA sequence Show only first row Show all	>Lus10010272 pacid=23169546 polypeptide=Lus10010272 locus=Lus10010272.g ID=Lus10010272.BGIv1.0 annot-version=v1.0 MAATSPPPHGGPERKHWWLTNRKIVDKYVKDARSLIASQEQGDVASALNLLDAALSLSPRFEPALELKAKSLLYLRRFKDVADLLQDYIPSFKIASDESS ISSSSSSSSSSSSSLSSSSSDVSSRAKLLQSDNSSSDFSEGRDPSFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLTLGQACCHLGLMEDAMVLLQTGKRL STAAFRRQSISWSEDSFSLSNFPISGDSSAPPTPPRNITETENITHLLAHIKLLLRRRAAAIAALDAGLYAEAIRHFSKIVDGRRGAPQGFLAECYMHRA FAYKFAGRIAEAIADCNKTLALDPSSIQALETRASLLETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRQNVTYREIPGKLCALSTKIQALKERVA AGETGNVDYYGLIGLRRGCSRSELERAHLLLVLRHKPDKATNFIDRSEIADLRDLDSIKDRAKMSALLLYRLIQRGYSTVMRNIIDEEAAEKQRKKDAAN AATAAAAAAAVHAAVEPVESKAATSSGSSNPAVFQGVFCRDLTAVGSLLSQVGFNLPIPVKYQALSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	0	1
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	1.0	0.9291
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	2.4	0.8886
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	4.0	0.8697
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	4.5	0.8399
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	5.0	0.8567
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	6.5	0.8794
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	8.8	0.8515
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	9.5	0.8255
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	10.7	0.8561
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	11.0	0.8387

Compare expression of checked genes

Lus10010272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.