Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47470 542 / 0 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 145 / 2e-39 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 137 / 1e-36 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT5G60640 106 / 5e-25 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G77510 99 / 8e-23 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT1G21750 98 / 4e-22 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G54960 92 / 5e-20 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G35620 77 / 2e-15 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G52260 77 / 4e-15 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT1G07960 70 / 3e-14 ATPDIL5-1 PDI-like 5-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036337 [exp] 689 / 0 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10020691 [exp] 488 / 5e-174 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10029854 [exp] 384 / 5e-133 AT2G47470 375 / 5e-130 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 144 / 7e-39 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 143 / 1e-38 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 134 / 3e-35 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029681 [exp] 102 / 8e-24 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 102 / 2e-23 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10021478 [exp] 97 / 7e-22 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122800 [exp] 579 / 0 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 573 / 0 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 144 / 3e-39 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.009G013600 [exp] 101 / 2e-23 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G082100 [exp] 97 / 8e-22 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 92 / 4e-20 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 82 / 5e-17 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 82 / 6e-17 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.009G004500 [exp] 73 / 2e-15 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.005G193400 [exp] 70 / 4e-14 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07749 [flax] [poplar] ERp29 Endoplasmic reticulum protein ERp29, C-terminal domain CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10010274 pacid=23169519 polypeptide=Lus10010274 locus=Lus10010274.g ID=Lus10010274.BGIv1.0 annot-version=v1.0 ATGGAGAATTACTCTCGGCGGATCTGGTTCGCCATCGGAGCGTTGACCTTGTTGGCTGTATCAGCTGCTGCGGACGACGTCCTTGTGCTAACCGAAGACA ACTTCGAAAAAGAGGTCGGCCAGGACAGAGATGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGACACTGTAAGAAGCTTGCTCCCGAGTATGAGAAGCT TGGAGCAAGCTTTAAGAAGGCGAAGTCTGTTTTGATCGCCAAGGTGGACTGTGATGAACACAAGAGCGTATGTTCCAAGTATGGTGTTTCCGGGTACCCA ACTATTCAGTGGTTCCCCAAAGGATCTCTAGAGCCTAAAAAATATGAAGGTCCACGCACTGCAGAAGCCCTCACTGAGTATGTCAATAGCGAAGCAGGAA CCAACGTGAAGATTGCTACTGCCCCATCTTACGTAACAGTATTGACAGCAGAGACATTCGATGAAGTCGTCTTGGATGATTCTAAAGATGTCTTGGTTGA GTTTTATGCACCTTGGTGTGGTCACTGCAAAACTCTTGCTCCTACCTATGAAAAAGTAGCCACTGCCTTCAAGTCGGAGGACGGTGTGGTGATTGCCAAT CTTGATGCCGACAAATACAAGGATTTAGCCGAGAAGTACGGAGTAAGTGGGTTCCCTACTTTGAAATTCTTCCCCAAAGGAAACAAGGCCGGGGAGGATT ACGACGGTGGAAGAGATTTGGAAGACTTTGTCACTTTCATCAACGAAAAGTCCGGTACCAGCCGTGACGGAAAGGGGCAACTTACCTCCAAGGCTGGTAT AGTTGAAAGTCTTGATGCCTTGGTGAAAGACTTTGTAGCTGCTGGTAGCAAAGACGAGAAGAAAGCAATCTATTCCCGTATGGAAGAAGAAGTTGCTAAA TTAAACGGCCCCCCTGCAAGGTATGGAAAGATCTACTTGAAAGCTGCAAAGAGCAGCATGGAGAAAGGTGATGGTTATGCCAAGAAGGAAACTGAGAGGC TGCAACGCATCCTGGAAAAGTCTATTAGCCCGGCTAAAGCTGATGAGTTCACCTTGAAGAAGAATATCCTTGTAGCATTTGCTTGA
AA sequence Show only first row Show all	>Lus10010274 pacid=23169519 polypeptide=Lus10010274 locus=Lus10010274.g ID=Lus10010274.BGIv1.0 annot-version=v1.0 MENYSRRIWFAIGALTLLAVSAAADDVLVLTEDNFEKEVGQDRDALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYP TIQWFPKGSLEPKKYEGPRTAEALTEYVNSEAGTNVKIATAPSYVTVLTAETFDEVVLDDSKDVLVEFYAPWCGHCKTLAPTYEKVATAFKSEDGVVIAN LDADKYKDLAEKYGVSGFPTLKFFPKGNKAGEDYDGGRDLEDFVTFINEKSGTSRDGKGQLTSKAGIVESLDALVKDFVAAGSKDEKKAIYSRMEEEVAK LNGPPARYGKIYLKAAKSSMEKGDGYAKKETERLQRILEKSISPAKADEFTLKKNILVAFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	0	1
AT2G38840			Guanylate-binding family prote...		Lus10018755 [exp]	2.4	0.9176
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	7.4	0.9343
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10010353 [exp]	7.7	0.8888
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	15.3	0.9158
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	15.8	0.8991
AT5G14030			translocon-associated protein ...		Lus10012565 [exp]	16.5	0.9002
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	18.0	0.9137
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	20.1	0.9047
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	20.6	0.8945
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	23.7	0.9147

Compare expression of checked genes

Lus10010274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.