Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46900 610 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036338 [exp] 1042 / 0 AT2G46900 630 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109500 [exp] 719 / 0 AT2G46900 574 / 0.0 unknown protein Potri.002G183500 [exp] 714 / 0 AT2G46900 559 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04910 [flax] [poplar] Tcf25 Transcriptional repressor TCF25
Representative CDS sequence Show only first row Show all	>Lus10010275 pacid=23169548 polypeptide=Lus10010275 locus=Lus10010275.g ID=Lus10010275.BGIv1.0 annot-version=v1.0 ATGGACGTCGTTCCGACCAATTTCTTCCTTAACGTTGTGGTGACCACCACTTCAACCCTCTCGAACGGGACACTCACCAGCGACCATATAAATAAGCAGT TCAACTTGGACCGCGCGATGATGCTCACTGAGGAGTCAGCGCTCGAAAAGATGCGAGAAGTGGCCGGCGCGCTTAAAATACCGATGAGTCGTTCCATACT CACCAAGGTTATGGGGATCGCTCGTGGGATCACTAACGGAAAGCATCCTCCATTCTTGACGCTCGACGGCGAACCTTTCGCGACTCTCATTGTCACCGTT GATGAAGGCAAGGTCACCAAAGTACAAAGTTGTCGACGGAGGATCGGGAAGAGGAGGAAGATCGTGAAGAAGATAAACAATCAAAGCAAGAAAGGAAGGA CCGTCGCAATGTCTGGTAGGTTACTAAAGAAAGTCCTGAAAGAGAGAGAGCAATCCCAGCTTCCGCAGCATGACGAGGAAGACGAAGAAGAAGAAACAGA CGGCGGCTCAGGTGCAGCAATCAACCCATTCGACCTTCTCAACGATGGCCAGGATGGCTCCGACCAGGAGAGTGAGCCGGAAGCTATTGATGAAATCAAG AGTGAGGAGAAACCAAAGCCACCTGTGAAATCGAATCTGAAATCAAAGAAGAAGAAAAAGAAGAAAACCAAAGCTGGTATGGCTTCAGGTAATGTTAACA AATTTGAAGAAACTTTAGAAGAGGCATTAGAGATGCTGTCCATGGGCTCTGCTAAACCTTCGGCAGCACCTGAACCTGATGGAGGAGTGGAAAGCAAGAA TTCGAAGAGGAACAGCAAAGAAACTGGCAAACTACAGCAAGCGCAGTCAATCTTGCTAGTGGATCCCAAGCATTTGAATCCGGACAATGAGCTACGGAGG ATATTCGGATCGGATGTTGTGAAATCTATTGAGAAGCACAGTCAAGCCAACAGTTCTAGGCTTGTTCGCGGTGGAGGCAGGCGTGGGAATCATCATACGA GGAAGACTGTCTTGGTTTCGCCTTCTGAACATTGGCCTCGCTGGGATGGTTCCTTAACCATGGAGTTTCTGGAATCAAAGGAAGGACTTCACTACTTCAG ATACATGCACTCATCTTCCTATAGCCAAGCTCAACGATCATTCGAAGCCTCTAAAGCAATTCACGACCTAAACGGAATAGCGAGCATTCTCATCCGCTAC CCTTATCACCTAGACTCACTCGTGACGATGGCTGACTATTTCAAGTTCGTGGGCGAACACCAAATGTCAGCCGACGCGATTGGCAAGTGTTTGTACGCGC TGGAATGCTCCTGGCATCCCATGTTTACTCCATTCCAAGGGAACTGCCAGTTGAAGATAAGCCACGAGACCAACAAGCCGATCTTCACCATCCTTTTCTC ACACATGAGAAACCTCGACAGACGAGGCTGCCATCGATCGGCCCTCGAAGTTTGCAAGCTGTTGCTTTCTCTAGATATCGACGACCCGGCCGGTTCCATA TTTTGCATCGACTATTTTGCTCTGAGGGCCATGGAGTATGCGTGGCTGGAGCAGTTCTCCGAAGAGTATATTAGTGATAACTCGTTGTGGCTGTTTCCGA ATTTCTCGTACTCTCTTGCGATTTGTCGGATTTACTTAGAGCAGGAGGAATCCTCGTCGAGTGGTGAAAAAGCTAGTTCGAGCGATCTGATGAAGCAGGC TCTGATGCTTCACCCTTCGACGGTTAAGAAACTAGTCGCCAAGGTTCCTTTGAAGGATCGGTCGTGGACGGATATAGTGAAGCATTCGTTTTTCAATTCG GAGAAAGCAGGATCTCCTTCATTGGATCATCTGATCAATTTGTACGTGGAGAGAAGTTATCTGTTATGGAGGCTTCCAGATATCCAAAAGTTGCTGAAGG ACACAGCTTTTCAAGTTATGGGAACTCTTGATCATGACAGCAGTGAAGCCAACGACTGGGCTTGTATCAGAAAAGAAGCTTTCAGCTCTGATAAAAACGA GTATGACTACCTGATGGTATCAGATTTCTCCGACACGGTGGCAACCCTTCCTCCCGAGAACTTGCAAGATCTCATGGTAGATCCAAGGATGAGGCCGGCT GATGAAAATGGCGGCCAGCAAGTAAATCAAGTTGCCGATGGCCTTCCTGCTCCACGGGATGTAGCCAACCGAAATGCAATAGCAGTCCTGATTGAATCAA TACTGCCGTGGGCTTATTACGGAGATGCTGAACATGGCGAAGCTAACCATGAGGATCAAGTTGGCCCAGAGAATGAAGATTGA
AA sequence Show only first row Show all	>Lus10010275 pacid=23169548 polypeptide=Lus10010275 locus=Lus10010275.g ID=Lus10010275.BGIv1.0 annot-version=v1.0 MDVVPTNFFLNVVVTTTSTLSNGTLTSDHINKQFNLDRAMMLTEESALEKMREVAGALKIPMSRSILTKVMGIARGITNGKHPPFLTLDGEPFATLIVTV DEGKVTKVQSCRRRIGKRRKIVKKINNQSKKGRTVAMSGRLLKKVLKEREQSQLPQHDEEDEEEETDGGSGAAINPFDLLNDGQDGSDQESEPEAIDEIK SEEKPKPPVKSNLKSKKKKKKKTKAGMASGNVNKFEETLEEALEMLSMGSAKPSAAPEPDGGVESKNSKRNSKETGKLQQAQSILLVDPKHLNPDNELRR IFGSDVVKSIEKHSQANSSRLVRGGGRRGNHHTRKTVLVSPSEHWPRWDGSLTMEFLESKEGLHYFRYMHSSSYSQAQRSFEASKAIHDLNGIASILIRY PYHLDSLVTMADYFKFVGEHQMSADAIGKCLYALECSWHPMFTPFQGNCQLKISHETNKPIFTILFSHMRNLDRRGCHRSALEVCKLLLSLDIDDPAGSI FCIDYFALRAMEYAWLEQFSEEYISDNSLWLFPNFSYSLAICRIYLEQEESSSSGEKASSSDLMKQALMLHPSTVKKLVAKVPLKDRSWTDIVKHSFFNS EKAGSPSLDHLINLYVERSYLLWRLPDIQKLLKDTAFQVMGTLDHDSSEANDWACIRKEAFSSDKNEYDYLMVSDFSDTVATLPPENLQDLMVDPRMRPA DENGGQQVNQVADGLPAPRDVANRNAIAVLIESILPWAYYGDAEHGEANHEDQVGPENED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46900			unknown protein		Lus10010275 [exp]	0	1
AT1G08400			RINT-1 / TIP-1 family (.1)		Lus10036104 [exp]	3.2	0.9189
AT5G06550			unknown protein		Lus10029343 [exp]	3.9	0.9356
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	4.7	0.9362
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	4.9	0.9263
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	5.1	0.9420
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	6.0	0.9135
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	11.7	0.9304
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	13.4	0.9048
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	13.7	0.9207
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	13.9	0.9230

Compare expression of checked genes

Lus10010275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.