Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62000 254 / 8e-85 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 234 / 1e-76 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26220 119 / 1e-32 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G67990 116 / 2e-31 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G67980 115 / 5e-31 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT4G34050 112 / 1e-29 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G24735 109 / 7e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036339 [exp] 359 / 4e-126 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 116 / 4e-30 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014074 [exp] 110 / 5e-29 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 109 / 9e-29 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 107 / 1e-27 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 107 / 1e-27 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034584 [exp] 96 / 2e-23 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10021804 [exp] 78 / 2e-17 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10012913 [exp] 0 / 1 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183600 [exp] 263 / 3e-88 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G136600 [exp] 125 / 7e-35 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.009G099800 [exp] 116 / 2e-31 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 116 / 2e-31 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.018G070300 [exp] 112 / 6e-30 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104400 [exp] 111 / 1e-29 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010276 pacid=23169517 polypeptide=Lus10010276 locus=Lus10010276.g ID=Lus10010276.BGIv1.0 annot-version=v1.0 ATGACGGCGACGGCAAACGGGGTAGCTTACCGTTGGTTCGCCGTAGCAACTGCGAGACCTGCAATTTCAGGCGCGATATGCGGTTCCTCCAGGGCGTGCA ATTCGATTTGTATGGTGAGTAATCGCCGCTGCTACTCTCTCAAGAACAATCCATCCTCCACCGCCGCCGATGCGGTGGTCGTGGCGGAGGACGATAAGTA CGGAAACAAACAGATAATCAGCCTCACTCCTCGCCTTTTACGACTACATTCTCTCCAACGTCCGGGAACCGGAGAACAAGTTCTTGAGAAATCTTGTTCA TCGGGAATGTATCTGTCAGGGATATATTCATCGCTGGCTGTTGCTCTGGCGTTACCGGAATCCGGCCAATTGGTTGCTTGTGAAAGGGATTTAAATTCTC TTGAAGTTGCTAAAAGGTTCTACAAAAGAGCTGGCGTTGATCACAGGGTGATTGCAAAGCATGGAATGGCAGCAAACATTCTGAAAACTCTGATTCAGAA TGGCGAATCCGGCAGTTATGATTTTGCGTTCATTGATGCGGAGAAGAGAATGAGCCACGAGTATTTCGAACTGCTACTGCAACTGGTGAAGGTTGGTGGT GTCATTGTGATTGACAATGTCCTTTGGCATGGGAAGGTTGCTGATCCATTGGTAACTGATGTCAAGACGGAGAGCATCAGAAGCTTCAACAGAAGGATAA TGGAGGATGAGCGTGTAAGCATCAGTATGGTGCCTATAGGCGATGGTATGACAATATGCCGGAAAAGGCAAACTGAATAG
AA sequence Show only first row Show all	>Lus10010276 pacid=23169517 polypeptide=Lus10010276 locus=Lus10010276.g ID=Lus10010276.BGIv1.0 annot-version=v1.0 MTATANGVAYRWFAVATARPAISGAICGSSRACNSICMVSNRRCYSLKNNPSSTAADAVVVAEDDKYGNKQIISLTPRLLRLHSLQRPGTGEQVLEKSCS SGMYLSGIYSSLAVALALPESGQLVACERDLNSLEVAKRFYKRAGVDHRVIAKHGMAANILKTLIQNGESGSYDFAFIDAEKRMSHEYFELLLQLVKVGG VIVIDNVLWHGKVADPLVTDVKTESIRSFNRRIMEDERVSISMVPIGDGMTICRKRQTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10010276 [exp]	0	1
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	11.1	0.7893
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	13.6	0.8091
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	14.5	0.7704
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	19.2	0.7652
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	21.8	0.7888
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	26.1	0.7827
AT3G26350			unknown protein		Lus10011406 [exp]	26.1	0.7586
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	34.0	0.7759
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	36.9	0.7190
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	38.7	0.7553

Compare expression of checked genes

Lus10010276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.