Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46910 209 / 5e-67 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036340 [exp] 228 / 1e-74 AT2G46910 325 / 6e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10000058 [exp] 96 / 4e-25 AT2G46910 112 / 8e-32 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183700 [exp] 214 / 7e-69 AT2G46910 366 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10010277 pacid=23169515 polypeptide=Lus10010277 locus=Lus10010277.g ID=Lus10010277.BGIv1.0 annot-version=v1.0 ATGCCATTTCAGCTCGAATTCCAGCATGCATCTAATTCCCAAGAAGAAGAAGAAGTTCACTTGTTTGGAAACGGCTCTAGCGACCGACAATGTTTCTCGG GTTTAGCTGATTCTAACCCTCTTCTCTCGAAAAATGTTTCATCATGTTCTCGTTCTGTAATTGAATTTTTGAAATGTCTCCCTTTTTGTTCTCATTGCGT ACTTCAGCAGTCCCCTGAGTTTCAGATTGAAGAAAAGAAGCATGATCTGTTAAGAGCTATCCAAGACACTCAACGAGGGCTTGTCACTACTCTTGATTCC ATGTTGACTCTTGTAAACTTGGAAGGATGCAACAGTGGTTCTCCAATCGACCTGTTGCTGCTAGATGGAACTTGGCGCCTGCAGTATACTTCTGCCTCTG ATGCCCTCGTGCTTTTCGAGGCTGCCGCAAAGCTTCCTTTCTTCCAGGAACAAGAAGGAGCCACTCTTCTTGTTTCAGCCAAATTCGATGTTGTCTCTGC ACGCAACGTCTATCTTCAGTTTGAAGAGATAAGCATACAGAACATCGAGATAAGTGAACAGCTACAAGCTGTGATAGCTCCAGCCATCCTACCACGCACA TTTCTAAGTTTACATATCTTGCAGTTCATCCAGCAATTCAAAGCTCAGATTCTGGTAGCAAGTCCGGATCCAGGAAGGCGGTCAGCGGGTGGGATGTACT ACCTTTCTTACCTGGATAATATGCTCCTGGGGAGATCAGTTGGAGGAGGTGGAGTTTTTGTGTTTACAAAAGCTCAGCCTCTCAACTTCCGAAGAAGCTT GTGCTGCAGCAAGTAA
AA sequence Show only first row Show all	>Lus10010277 pacid=23169515 polypeptide=Lus10010277 locus=Lus10010277.g ID=Lus10010277.BGIv1.0 annot-version=v1.0 MPFQLEFQHASNSQEEEEVHLFGNGSSDRQCFSGLADSNPLLSKNVSSCSRSVIEFLKCLPFCSHCVLQQSPEFQIEEKKHDLLRAIQDTQRGLVTTLDS MLTLVNLEGCNSGSPIDLLLLDGTWRLQYTSASDALVLFEAAAKLPFFQEQEGATLLVSAKFDVVSARNVYLQFEEISIQNIEISEQLQAVIAPAILPRT FLSLHILQFIQQFKAQILVASPDPGRRSAGGMYYLSYLDNMLLGRSVGGGGVFVFTKAQPLNFRRSLCCSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	0	1
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	1.4	0.9057
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	2.0	0.8986
AT1G73350			unknown protein		Lus10026363 [exp]	3.0	0.8759
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023908 [exp]	3.5	0.8759
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	4.0	0.8554
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	7.9	0.8508
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	8.8	0.8593
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	8.8	0.8429
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	11.0	0.8411
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	11.4	0.8446

Compare expression of checked genes

Lus10010277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.