Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 149 / 1e-41 Eukaryotic aspartyl protease family protein (.1) AT1G03230 147 / 1e-40 Eukaryotic aspartyl protease family protein (.1) AT5G19110 54 / 5e-08 Eukaryotic aspartyl protease family protein (.1) AT5G48430 44 / 0.0001 Eukaryotic aspartyl protease family protein (.1) AT5G19100 43 / 0.0002 Eukaryotic aspartyl protease family protein (.1) AT5G19120 43 / 0.0002 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036343 [exp] 239 / 1e-75 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 144 / 3e-39 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 140 / 4e-38 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 139 / 5e-38 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 134 / 2e-35 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 132 / 4e-35 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 121 / 3e-31 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 93 / 8e-21 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 89 / 1e-19 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054900 [exp] 184 / 1e-54 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 135 / 4e-36 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 108 / 2e-26 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 86 / 2e-18 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 85 / 4e-18 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 84 / 6e-18 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 84 / 9e-18 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 83 / 1e-17 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 82 / 3e-17 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 77 / 2e-15 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010278 pacid=23169507 polypeptide=Lus10010278 locus=Lus10010278.g ID=Lus10010278.BGIv1.0 annot-version=v1.0 ATGGCGCCTAATTTCTCAATCCTCATCCTCCTAATCTCCACTCTCCTCTACCTCTCCCCATCCACCACCGCCCAACAATCCTTCCGCCCCAAATCCCTTA TCCTCCCGGCCACTAAAGACCCCGCCACCCTCCAGTACACCACGCGCCTTCGCCAGCGCACCCCGCTCGTCTCCCTCACGCTCCTCCTCCATCTCGGCGG CGAACACCTCTGGGTCGACTGCTCCTCCCCTCACTACATCTCCTCCACCTACACCCCCGCCCGCTGCCGCTCCTCCCTCTGCTCCCTCGCCGGATCAAAC GGCTGCGGCGACTGCTTCTCCCCTCCTTCCCCCGGCTGCAACAACAACACCTGCGGCGTCTCCCCCGACAACCCCATCACCCGCACCGCTACCTCCGGCG AACTCGCCACCGACGTCTTATCTCTCAACTCCACCGACGGATCCAACCCGACCCGCCCAGTTTCCGTGCCCCGGTTCTTATTCGCCTGCGCCCCGAATTT CTTGCTCCGCGGACTGGTCAACGGCACTGCTGGCGGGGCGGGGCGGCGGGGGGAGGGCGGGGGGGGGCGGAGGCCGCCTTGGGCGGGAGAGTCCTACCTC GGAGTGAACGGGATTAACGTCGACGGCAAGGCGGTGGCGAATCTGAACACGTCGATGCTGGCGATCGACGGCCAGACCGGGAGGGGAGGGACGAGGCTGA GCACGGTGGATCCGTACACGGTGATGGAGTCGTCGATCTACTCCGCCGTCACATCGGCGTTCGTGAAGGCGGCGGCAGCGAGGAACATTACTCAAAGAGC GAAGGCGGTGGCGCCGTTCGAGATTTGCTTCGATTCGAGAAGGATCCCGCCGACGAGGATCGGATATTCGGTGCCGACGGTGGAGCTGGTGATGCTGAAC CGCGGGAGCTCGACGTCGTGGAGCTTGTTTGGGGCGAACTCTTCGACTCTATGGTTCAGGTGA
AA sequence Show only first row Show all	>Lus10010278 pacid=23169507 polypeptide=Lus10010278 locus=Lus10010278.g ID=Lus10010278.BGIv1.0 annot-version=v1.0 MAPNFSILILLISTLLYLSPSTTAQQSFRPKSLILPATKDPATLQYTTRLRQRTPLVSLTLLLHLGGEHLWVDCSSPHYISSTYTPARCRSSLCSLAGSN GCGDCFSPPSPGCNNNTCGVSPDNPITRTATSGELATDVLSLNSTDGSNPTRPVSVPRFLFACAPNFLLRGLVNGTAGGAGRRGEGGGGRRPPWAGESYL GVNGINVDGKAVANLNTSMLAIDGQTGRGGTRLSTVDPYTVMESSIYSAVTSAFVKAAAARNITQRAKAVAPFEICFDSRRIPPTRIGYSVPTVELVMLN RGSSTSWSLFGANSSTLWFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	0	1
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	1.0	0.9980
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	1.4	0.9974
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	2.6	0.9947
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10039646 [exp]	3.6	0.9927
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	3.9	0.9958
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	4.9	0.9957
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	6.0	0.9949
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	6.3	0.9954
AT1G35210			unknown protein		Lus10010343 [exp]	7.1	0.9936
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	7.5	0.9923

Compare expression of checked genes

Lus10010278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.