Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28200 195 / 4e-62 FIP1 FH interacting protein 1 (.1) AT2G22475 196 / 8e-62 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G01600 176 / 7e-55 GRAM domain family protein (.1.2) AT5G13200 155 / 2e-46 GRAM domain family protein (.1) AT5G23370 137 / 5e-40 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 136 / 6e-39 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 132 / 4e-38 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 131 / 1e-37 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G40100 124 / 8e-35 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036344 [exp] 264 / 3e-90 AT2G22475 118 / 1e-32 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10040539 [exp] 196 / 7e-62 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 191 / 3e-60 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10025728 [exp] 189 / 9e-59 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10035933 [exp] 167 / 1e-49 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10031986 [exp] 157 / 6e-47 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 154 / 6e-46 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10017372 [exp] 147 / 8e-44 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 140 / 6e-41 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109700 [exp] 248 / 2e-83 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.002G184100 [exp] 240 / 1e-80 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.002G102800 [exp] 185 / 1e-57 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.005G159100 [exp] 182 / 1e-56 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.003G165400 [exp] 162 / 1e-48 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165500 [exp] 158 / 3e-47 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165700 [exp] 157 / 1e-46 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.005G088300 [exp] 154 / 1e-46 AT5G23370 244 / 4e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.005G088400 [exp] 154 / 2e-46 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1) Potri.003G165600 [exp] 150 / 3e-44 AT5G13200 323 / 1e-111 GRAM domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10010279 pacid=23169523 polypeptide=Lus10010279 locus=Lus10010279.g ID=Lus10010279.BGIv1.0 annot-version=v1.0 ATGGAACATAATAAGCAGCAGCAGCAGCAGCAACAGATGATGATCAAAGGAAACCAGGGTTACGTGGAGACGGTGCCTGTTCATCCTGATCAAGCTCCCG CCACTTACGGACATGGCCCGGTGGGTAGAGTTTGCTTTGCGGTGAGCAGATGTGGGAAGAGGTTCGAAGACGTTACCAAGAGAGCTGAGGGTTATGCCGA TGGCTTCTGGCGTCACTTGAAGACTAGTCCAAACTTGGGGGACACGACAATGGCGAGGCTGGCACAGGGGACGAAGGTGATTGCAGAAGGTGGATATGAG AAAGTGTTCATCCAAACATTCGGAATAATGGCCGACGAGAAGTTTCTGAATTCATACGCTTGCTACCTCTCAACTTCTACAGGTCCAGTGATCGGAACCC TTTACGTTTCCACCAAGAAAGTGGCCTTTTGCAGTGACTATCCTATGTCTTACCGTTACCCAACAGGTCAACAAGAATGGATCTATTACAAGATTGTGAT AAGAGTCGAAGAGTTGTATGGGGTGAATACATCTAGGAATCCAGCAGAAAAATACATCCAACTTCTGACAGTTGACCGTCGCGAATTCTGGTTCATGGGA TTCATCTCTTTCGACAAGGCCTTCAAGCAGTTGCGACAAGTTTTGATTCCGATAGCTAAACCTGCTTCCATGGTGTCATCTCATATCCCCACTCCTTCTT CAACAGTGCCAACGCATATCCCAGTTAAGTAA
AA sequence Show only first row Show all	>Lus10010279 pacid=23169523 polypeptide=Lus10010279 locus=Lus10010279.g ID=Lus10010279.BGIv1.0 annot-version=v1.0 MEHNKQQQQQQQMMIKGNQGYVETVPVHPDQAPATYGHGPVGRVCFAVSRCGKRFEDVTKRAEGYADGFWRHLKTSPNLGDTTMARLAQGTKVIAEGGYE KVFIQTFGIMADEKFLNSYACYLSTSTGPVIGTLYVSTKKVAFCSDYPMSYRYPTGQQEWIYYKIVIRVEELYGVNTSRNPAEKYIQLLTVDRREFWFMG FISFDKAFKQLRQVLIPIAKPASMVSSHIPTPSSTVPTHIPVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	0	1
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	2.4	0.9542
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	2.6	0.9546
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	5.5	0.9367
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	6.0	0.9483
AT1G74090		SOT18, ATSOT18,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10003069 [exp]	6.2	0.9002
					Lus10003556 [exp]	6.5	0.9409
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	6.6	0.9475
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	8.5	0.9370
					Lus10038232 [exp]	8.7	0.9455
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	9.8	0.9441

Compare expression of checked genes

Lus10010279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.