Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02910 609 / 0 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28740 127 / 1e-32 unknown protein AT1G55480 55 / 6e-08 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036345 [exp] 778 / 0 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10019188 [exp] 186 / 4e-51 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10011914 [exp] 137 / 5e-36 AT4G28740 374 / 5e-129 unknown protein Lus10022845 [exp] 63 / 1e-11 AT4G28740 206 / 8e-67 unknown protein Lus10010322 [exp] 58 / 7e-09 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10013403 [exp] 51 / 9e-07 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206300 [exp] 660 / 0 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G194500 [exp] 137 / 2e-36 AT4G28740 301 / 5e-101 unknown protein Potri.003G222200 [exp] 56 / 3e-08 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.001G002700 [exp] 42 / 0.0006 AT1G55480 303 / 1e-101 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] PF11998 [flax] [poplar] DUF3493 Low psii accumulation1 / Rep27
Representative CDS sequence Show only first row Show all	>Lus10010280 pacid=23169496 polypeptide=Lus10010280 locus=Lus10010280.g ID=Lus10010280.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCCGCAGCTGCTGTTTCCCTTAACCAGAATCTTCTCTTCCTCTCTAATCCAATATCTGGACGCTCGATTTCAACCAACGGCCCTCTTTCAT TCTACATCCGGCGAACAATAGTGATAAGTATCCCTCCTCCGAAGAAGAAGAAGCGTAGTCTCACTTCCATAACTTTTTCTTCTTCTCCTTCTTCGTCGCC AGCTTCTCAGTCACCTGAAGACGCCACCGAGAAGACAGCAGAATCCTGCGTCAATCTAGGCCTCTCACTCTTCTCAAGAGGACGGGTTAAAGATGCGTTG TTCCAATTTGAAACGGCGCTGAGCTTGGATCCTAACCCCATCGAGGCCCAAGCTGCTCTCTATAACAAGGCTTGCTGCCATGCTTACAGAGGAGAAGGGA AGAAGGTTTCTGATTGCTTGCGAACAGCTTTGAGAGAATATAACCTCAAGTTCTCCACTATTCTTAATGATCCGGACTTGGCATCCTTTAGAGCTTTGCC TGAGTTTAAGGAACTGCAAGAAGAGGCTAGGCTGGGTGGAGAAGACATAGGCGGAAGTTTCCGAAGGGATCTGAAACTCATTAGCGAAGTCCAAGCACCA TTTCGCGGGGTTAGGAGATTCTTTTACCTTGCATTCATAGCGGCTGCAGGAATATCAACCTTCTTTACAGTTCCTAGGCTTGTTCGTGCGATCCTAGGTG GTGATGGTGCTCCTGATCTATCGGAAACCGCTGGGAATACTTTAATTAATATAGGAGGTATTGCAGTTCTTGTTGCGTTGCTTGTGTGGGATAATAAAAA AGAGGAACAACAACTTGCACAGATAACCAGAGATGAAACTCTCTCAAGGTTGCCTTTGCGCCTTTCGACGAATCGTGTTGTTGAGCTTGTTCAACTCCGA GATACCTACAGGCCAGTAATTCTAGCTGGGAAGAAGGAGACTGTAAACTTGGCTATGCAGAAAGCAGAAAGATTCCGTACCGAGCTTCTCAGGCGAGGTG TTCTGTTGGTGCCGGTTATATGGGATGAGAGCAGAAGATCAGAAATTGAGAAGAAAGGTTTTGGCACATCTCGAAAAGCAGCAGCTGCCCTTCCATCTAT TGGGGAAGATTTTGAGAAACGAGCCCAGTCTGTTATCGCAAAATCGAAGTTGAAAGCTGAAATCCGATTCAAGGCCGAGGTTGTATCCCCTGCTGAATGG GAAAGGTGGATAATGGATCAGCAAAAATCTGAAGGTGTTACTCCTGGTGAAGATGTCTACATAATACTGCGGCTGGATGGTCGAGTTCGAAGATCCGGGA AAGGAATTCCCGATTGGCCAGAGATGGTGAAGGAACCGCCGCCAATGGAACGGCTCAATTCAATTGACCCAGGGAATTCCCGATTGGCCAGAGATGTTGA AGGAACTGCCGCCAATGGAAGCGCTATTAAGTAA
AA sequence Show only first row Show all	>Lus10010280 pacid=23169496 polypeptide=Lus10010280 locus=Lus10010280.g ID=Lus10010280.BGIv1.0 annot-version=v1.0 MAAAAAAVSLNQNLLFLSNPISGRSISTNGPLSFYIRRTIVISIPPPKKKKRSLTSITFSSSPSSSPASQSPEDATEKTAESCVNLGLSLFSRGRVKDAL FQFETALSLDPNPIEAQAALYNKACCHAYRGEGKKVSDCLRTALREYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGGSFRRDLKLISEVQAP FRGVRRFFYLAFIAAAGISTFFTVPRLVRAILGGDGAPDLSETAGNTLINIGGIAVLVALLVWDNKKEEQQLAQITRDETLSRLPLRLSTNRVVELVQLR DTYRPVILAGKKETVNLAMQKAERFRTELLRRGVLLVPVIWDESRRSEIEKKGFGTSRKAAAALPSIGEDFEKRAQSVIAKSKLKAEIRFKAEVVSPAEW ERWIMDQQKSEGVTPGEDVYIILRLDGRVRRSGKGIPDWPEMVKEPPPMERLNSIDPGNSRLARDVEGTAANGSAIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10010280 [exp]	0	1
AT3G51510			unknown protein		Lus10034765 [exp]	9.1	0.8565
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10015739 [exp]	19.2	0.8133
AT5G64380			Inositol monophosphatase famil...		Lus10007061 [exp]	22.1	0.8181
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10021698 [exp]	37.6	0.7995
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	44.2	0.8057
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	46.9	0.7969
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	52.6	0.7994
AT5G52960			unknown protein		Lus10027566 [exp]	57.4	0.8033
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10023707 [exp]	68.2	0.7464
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	74.9	0.7786

Compare expression of checked genes

Lus10010280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.