Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47770 126 / 6e-37 ATTSPO TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000500 [exp] 76 / 4e-17 AT2G47770 86 / 5e-21 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Lus10036346 [exp] 65 / 3e-13 ND 40 / 4e-04 Lus10037513 [exp] 64 / 5e-13 AT2G47770 86 / 4e-21 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G131400 [exp] 189 / 1e-61 AT2G47770 156 / 3e-48 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.002G206100 [exp] 187 / 1e-60 AT2G47770 179 / 3e-57 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.010G025200 [exp] 99 / 2e-26 AT2G47770 111 / 6e-31 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03073 [flax] [poplar] TspO_MBR TspO/MBR family
Representative CDS sequence Show only first row Show all	>Lus10010281 pacid=23169479 polypeptide=Lus10010281 locus=Lus10010281.g ID=Lus10010281.BGIv1.0 annot-version=v1.0 ATGAATACATCAGGGACAAACAACATAAGCAGTACGAGAGACCAAGGAGAGAAGAGGATGGTCATGGCAAAGAGGGGGCTACGGTCGCTTGCCGTAGCCC TAGGTCTTCCTCCTTCCCTAACGATTCTAAGCATCTACTTCCTCGGTGGCGGTGGCTACAACAGCGACGACGAGCTATTGCCGGTGTCGTCGTATAAGAA GCCGTTTTGGTTCCCACCATCGTGGGTGATCCACGTTTTTTGCGTGACTAGCACTTTTTTAATGGGCCTTTCTGGGTGGCTAGTTTGGGCGGAGGGTAGG TTTCACAACGAACCTGCGACATTGTACATATATGGAGTCCAGATGGGATTCAACTCGATTTTGATCCCGATTGTGTGTGGGTTAAATATCCCATCATTAG GGCTCATCATATCTATGTGTTTGCTTGGGGCACTAATAAGCTGTTCTCGCCATTTTAGGATCACGAATCCTATTGCTGCTGATTTGGTCAAGCCATGCAT TGCTTGGGCTGCCTTCTTGATTATTCTCAATCTCAAACTCATTTAG
AA sequence Show only first row Show all	>Lus10010281 pacid=23169479 polypeptide=Lus10010281 locus=Lus10010281.g ID=Lus10010281.BGIv1.0 annot-version=v1.0 MNTSGTNNISSTRDQGEKRMVMAKRGLRSLAVALGLPPSLTILSIYFLGGGGYNSDDELLPVSSYKKPFWFPPSWVIHVFCVTSTFLMGLSGWLVWAEGR FHNEPATLYIYGVQMGFNSILIPIVCGLNIPSLGLIISMCLLGALISCSRHFRITNPIAADLVKPCIAWAAFLIILNLKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	0	1
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	1.4	0.9454
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	3.7	0.9193
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	10.0	0.8725
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	11.8	0.9084
					Lus10000028 [exp]	12.4	0.9113
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	13.9	0.8500
AT5G41761			unknown protein		Lus10000541 [exp]	14.3	0.8482
					Lus10006075 [exp]	16.3	0.9040
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003889 [exp]	19.1	0.8827
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	22.6	0.8930

Compare expression of checked genes

Lus10010281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.