Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02880 295 / 3e-102 TPK1 thiamin pyrophosphokinase1 (.1.2.3.4) AT2G44750 284 / 1e-97 TPK2 thiamin pyrophosphokinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036348 [exp] 313 / 1e-109 AT1G02880 327 / 1e-113 thiamin pyrophosphokinase1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205800 [exp] 325 / 2e-113 AT1G02880 385 / 4e-136 thiamin pyrophosphokinase1 (.1.2.3.4) Potri.014G130900 [exp] 322 / 1e-112 AT1G02880 395 / 8e-141 thiamin pyrophosphokinase1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04263 [flax] [poplar] TPK_catalytic Thiamin pyrophosphokinase, catalytic domain PF04265 [flax] [poplar] TPK_B1_binding Thiamin pyrophosphokinase, vitamin B1 binding domain
Representative CDS sequence Show only first row Show all	>Lus10010283 pacid=23169526 polypeptide=Lus10010283 locus=Lus10010283.g ID=Lus10010283.BGIv1.0 annot-version=v1.0 ATGCCTCTTCTCTTCCCTCACGAATCTGCCGCCGATGTTCGCCACAGGTTCAGGCCAGACGTAATCAAAGGGGATATGGATTCGGTTCGATCCGAAGTTC TTAACTTCTACAGTGATCTGGGAATCAAGGTAGTTGATGAATCTCATGATCAAGATACCACTGATCTGCACAAGTGTGTGGCTTATATAAGAAATGTGAT ACCAGATGTCGACAAGTCTAGCCTTTGCATCCTTGTAACTGGATCGCTTGGAGGTCGTTTTGATCATGAAGCTGGCAACATCAATGTCATACACCGCTTC TCAACCACGAGGATAATCCTTCTATCAGACGAATGCCTCATTTATCTACTCCCAAAGACTCACTACCATGAAATACACGTGAACTCCTCGTTCGAGGGGC CGCATTGTGGTCTCATCCCAATAGGAAAGCCATCGATGAGAACTACAACAACCGGTCTTCAATGGGACCTCAATGATACGGAGATGATGTTTGGTGGACT AGTAAGTACGTCGAACAAAGTTAGAGCAGAAAAGGTTACGGTGGAATCGGACGAAGATCTGTTGTGGACCATATCAATAAAAAAGGATTGA
AA sequence Show only first row Show all	>Lus10010283 pacid=23169526 polypeptide=Lus10010283 locus=Lus10010283.g ID=Lus10010283.BGIv1.0 annot-version=v1.0 MPLLFPHESAADVRHRFRPDVIKGDMDSVRSEVLNFYSDLGIKVVDESHDQDTTDLHKCVAYIRNVIPDVDKSSLCILVTGSLGGRFDHEAGNINVIHRF STTRIILLSDECLIYLLPKTHYHEIHVNSSFEGPHCGLIPIGKPSMRTTTTGLQWDLNDTEMMFGGLVSTSNKVRAEKVTVESDEDLLWTISIKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	0	1
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	1.7	0.8648
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	2.0	0.8383
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	2.8	0.8299
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	6.7	0.8209
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	9.2	0.7875
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	12.6	0.8132
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	13.9	0.7989
AT4G22320			unknown protein		Lus10032566 [exp]	15.9	0.8036
AT3G54630			unknown protein		Lus10030643 [exp]	17.9	0.7383
AT1G75060			unknown protein		Lus10028777 [exp]	25.0	0.8162

Compare expression of checked genes

Lus10010283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.