Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02460 194 / 2e-55 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030376 [exp] 575 / 0 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10007866 [exp] 568 / 0 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130800 [exp] 234 / 8e-70 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08676 [flax] [poplar] MutL_C MutL C terminal dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10010284 pacid=23169536 polypeptide=Lus10010284 locus=Lus10010284.g ID=Lus10010284.BGIv1.0 annot-version=v1.0 ATGACGTCCATTGTCGGCGAGAACCTTGTCGGCCGGAGAAAGGTTTCCGATTCCGATTTTGGAGGATTTGGTACTGGATTGCATCGAAGTAACAAGGCTG ATTCACCAAAAAAGAATAGCGAAGTCCCAAGCCCTCTCAATGTTGATTTGGATAAAAATTCCCCATCTACCGATAGAGTTATTGAGAAAGATGTTAACAA TAAGGATGGGAGTATTGCATTATCCACTGTGCAGTCAACACTGAAGAAGTTTGTAACTGTAAATAAGAGGAAGCATGAAGATATTGGTCCACCAATATCT GAAATCCCTGTTCTAAGAAACCAAATTGTTCATTCTCCTCCAGAAAAGAGAACTTCTGGAGTGTGTGTGGCTGATAAAAGCCTGTTTGTTGCTCATCGAC GAAGCAGTTATTTTGATAACTTGATGGAGACTGAGATACCCAAGAATCTTGGAGCAGATAAGTCGACAAGTTCCTTGCTGTCTGGAATATCTGAAGAAGG AAAGGAGGATCCCGTGGTTGAAGGGAACCTATTATTTACAGAGGAAGCTGCACATGCAATTTCAGAAGATGCTCGCTGTGATGTGATGGTTGATGCTCCA GTGCCATCTGCTGCAAAGAAGACGACTTCCACGCTGCAGTTTAGTTCTCAAGACTTGACGGCAAAGAGAAAACAGATTCGGTCAAGAATGAAGTCTCACG ATGGTGCTAGTGGCATCATTAACATTACAAGACATCGGAGCTATGCTGCTGCCACAATGGAGCTTTCTCAACCTGAGGATGGTGAGTGTAAATCTAAAGC TTTAGCGGCTGCAACTACCGAGTTGGATAGACGTTTCGAGAAAGAGAACTTTGGCAGAATGAAGGTGATAGGCCAATTTAATCTTGGATTTATCATCGGG AAGCTAGACAAAGACCTGTTTATTGTGGATCAGCACGCAGCCGATGAGAAATATAATTTTGAGCAGCTGTGCCAATCAACCATCTTGAACCAGCAGCCGT TGCTTCGGTAA
AA sequence Show only first row Show all	>Lus10010284 pacid=23169536 polypeptide=Lus10010284 locus=Lus10010284.g ID=Lus10010284.BGIv1.0 annot-version=v1.0 MTSIVGENLVGRRKVSDSDFGGFGTGLHRSNKADSPKKNSEVPSPLNVDLDKNSPSTDRVIEKDVNNKDGSIALSTVQSTLKKFVTVNKRKHEDIGPPIS EIPVLRNQIVHSPPEKRTSGVCVADKSLFVAHRRSSYFDNLMETEIPKNLGADKSTSSLLSGISEEGKEDPVVEGNLLFTEEAAHAISEDARCDVMVDAP VPSAAKKTTSTLQFSSQDLTAKRKQIRSRMKSHDGASGIINITRHRSYAAATMELSQPEDGECKSKALAAATTELDRRFEKENFGRMKVIGQFNLGFIIG KLDKDLFIVDQHAADEKYNFEQLCQSTILNQQPLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10010284 [exp]	0	1
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	17.2	0.8819
AT3G52710			unknown protein		Lus10021354 [exp]	23.8	0.8904
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10024486 [exp]	23.9	0.8990
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	35.7	0.8885
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	42.0	0.8732
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	43.4	0.8855
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	46.9	0.8695
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	49.3	0.8375
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	54.0	0.8761
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	66.3	0.8674

Compare expression of checked genes

Lus10010284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.