Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63140 491 / 4e-174 ATPAP29, PAP29 purple acid phosphatase 29 (.1) AT2G46880 381 / 9e-131 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2) AT5G57140 345 / 2e-116 ATPAP28, PAP28 purple acid phosphatase 28 (.1) AT3G10150 104 / 7e-25 ATPAP16, PAP16 purple acid phosphatase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009863 [exp] 688 / 0 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1) Lus10022947 [exp] 339 / 5e-114 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1) Lus10027596 [exp] 339 / 5e-114 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1) Lus10018030 [exp] 90 / 1e-19 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1) Lus10031039 [exp] 80 / 3e-16 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183000 [exp] 600 / 0 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1) Potri.002G183200 [exp] 599 / 0 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1) Potri.014G109100 [exp] 595 / 0 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1) Potri.006G074300 [exp] 362 / 5e-123 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1) Potri.006G074500 [exp] 337 / 2e-113 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1) Potri.016G042500 [exp] 99 / 1e-22 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10010289 pacid=23169530 polypeptide=Lus10010289 locus=Lus10010289.g ID=Lus10010289.BGIv1.0 annot-version=v1.0 ATGTTTCCGGCGGCGGCTGCGGAAGGAGGAGGGCTGAGGTTTGGGAAGAACGGGCAGCTGAAGATACTGCAAGTGGCGGATATGCACTTCGGCAACGGCA AGACCACCGGCTGCTTGGACGTCTTCCCTAATCAGACCAACACTTGCTCCGACCTCAACACCACCGCCTTCGTTCAGCGGATGATCCACGCCGAGCGTCC CGATCTCATCGTTTTCACCGGGGACAATATCTATGGACCCAACGCTATAGACGCAGCTAAGTCGATGAACGCTGCATTCGAGCCTGCAATCGCGTCTGGC ATTCCGTGGGCAGCCGTTCTGGGGAACCATGATCAGGAATCCACATTGTCGAGGGAAGGTGTGATGAAACACATTGCTGGACTCAAGAACACTCTTGCAA GTGTCAATCCGGCCTCTGATCATGTCATCGACGGATTTGGGAACTACAATCTGGAAGTTGGCGGGGTTAGAGGTTCTTCATTCGAGAACAAATCGGTTCT TAACCTCTATTTTCTTGACAGTGGTGACTACTCCACTGTTCCTTCCATTCATGGCTATGGCTGGATCAAACCTTCTCAGCAGTTCTGGTTCGAAGAAACG TCCTCAAAACTCCGGAAATCATACATGAGAAGTCCACAAGCACAGGAAGGACCCGCACCTGGACTAGCGTACTTCCACATCCCATTACCCGAATTCACAA GTTTCGATGAATCCAACTTCATTGGAGTGAGACAAGAAGGAATAAGCTCGGCCACCGTGAACTCGGGATTCTTCACAACCATGGAGGAGGCAGGAGATGT GAAGGCTGCCTTCACGGGCCATGACCACTTGAACGACTTCTGCGGCAGGCTGAATGGGATACACCTCTGCTATGCTGGCGGGTTCGGTTACCACGCCTAC GGGAAGGCGGGATGGTCTAGGAGGGCAAGAGTTGTCGTGGCATCTTTGGAGAAGTTGCGGAGTGGAGAGTGGGGAGCTGTCGAGTCGATCAAGACGTGGA AACGCCTCGACAATCGTCAGCTTACTGGGATCGACGGTCAGGTCCTCTGGAGCAAAACCGCTGGAGAAACACCAAAAAGCTGGAATGAAAGTAAACCGGG CTTCGGAAGAAGTCTTCTTCTCCGGGAAATGCAGCAGATCACAGTGCCTGAGACATCACAATGGTTATGCTTCCTCCTCGTCAAATAG
AA sequence Show only first row Show all	>Lus10010289 pacid=23169530 polypeptide=Lus10010289 locus=Lus10010289.g ID=Lus10010289.BGIv1.0 annot-version=v1.0 MFPAAAAEGGGLRFGKNGQLKILQVADMHFGNGKTTGCLDVFPNQTNTCSDLNTTAFVQRMIHAERPDLIVFTGDNIYGPNAIDAAKSMNAAFEPAIASG IPWAAVLGNHDQESTLSREGVMKHIAGLKNTLASVNPASDHVIDGFGNYNLEVGGVRGSSFENKSVLNLYFLDSGDYSTVPSIHGYGWIKPSQQFWFEET SSKLRKSYMRSPQAQEGPAPGLAYFHIPLPEFTSFDESNFIGVRQEGISSATVNSGFFTTMEEAGDVKAAFTGHDHLNDFCGRLNGIHLCYAGGFGYHAY GKAGWSRRARVVVASLEKLRSGEWGAVESIKTWKRLDNRQLTGIDGQVLWSKTAGETPKSWNESKPGFGRSLLLREMQQITVPETSQWLCFLLVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	2.4	0.8387
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	3.9	0.8304
AT4G03230			S-locus lectin protein kinase ...		Lus10033742 [exp]	7.1	0.7645
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	8.5	0.8291
AT5G57510			unknown protein		Lus10009171 [exp]	9.0	0.7497
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	9.2	0.8308
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	12.4	0.7797
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	14.5	0.7791
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009672 [exp]	15.5	0.7252
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	18.6	0.7700

Compare expression of checked genes

Lus10010289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.