Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49350 354 / 7e-120 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009862 [exp] 530 / 0 AT1G49350 291 / 2e-96 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151600 [exp] 479 / 2e-168 AT1G49350 389 / 1e-133 pfkB-like carbohydrate kinase family protein (.1) Potri.004G152100 [exp] 475 / 1e-166 AT1G49350 392 / 6e-135 pfkB-like carbohydrate kinase family protein (.1) Potri.011G114100 [exp] 46 / 3e-05 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10010290 pacid=23169497 polypeptide=Lus10010290 locus=Lus10010290.g ID=Lus10010290.BGIv1.0 annot-version=v1.0 ATGAGTCAAACGGCGAGTCCTGCAGCTGAGCGGCGATTAGATCGAATCTCCCGCCACCTCTGCCCGCCGCCGGGAAAGCAACTCGGCCGCCACGTTCTTC ATCAGGCTGGTGTTAGCGGCGGGCAAGCAATCTACGAGCCGGTGGGAAGTGAACCAGTAGTGATCGGCGGTATGGTGTTGGATATTCACGCCATTCCATC CGTCTCTCCACAACCTAGAACCACTACTCCTGGAAAGGTCAATTATTTACTTGGAGGTGTTGGAAGGAACATTGCAGAGTGCATGGCAAAGCTTGGGACT AGGCCTTACATGATTAGTGCTGTTGGAATCGACTTTGCTGGCAAGCTGCTGTTGGAGAACTGGAAGTCCGCCGGGCTACCAACTGAAGGGATTCGGAAAC ACCAAGATATCAATACTGCGGTAATATCAAATGTATTCGACACAGATGGAGAGTTGGCTGCTGGTGTTGCAAGTGTGGATGCAATTGAAAAATTCCTCAC CCCTGCTTGGATTCAGCAGTGCCAGTCAAGTATTCGCAGTGCTCCTATATTGGTCGTCGATGCAAACTTGAGTCCTATTGCCTTGGAAGCTTCTTGCAAA GTGGCTGCTGAGTTTAATAGACCTGTTTGGTTTGAGCCAGTATCGGTAGCCAAATCTACGAGAATCACCTCGATTGCCAAGTATGTAACATTTGCTTCAC CTAACGACGATGAGCTTATGTCAATGGCAAATACACTCTCCGGCGGGAACTCTTTCCGTTCGGTCAAAAGAAACGGCGACTACAAAAAGGATTCTCCAAA ATCGCTGTTCGACAAATTGAAACCAGCGGTTTCAGTTTTGCTAGACCAAGGAATCAAGATTGTTGCTGTCACCGTCGGTGAAGATGGACTCTTTCTTTGC TCTAACGATCCAGACTTCCTTACATTTCGCTTGCAGGTAACGGAAACCAACCGAATTGGCAAATGGCTGTACAATGCAGTGACATCAGCCTGTCCTCCTC TACCTTTCGTTTTGTCCACGAAACCCGAGGGGACCACCTCTCGGGTGTTTGCAGTACATTTTCCTGCTGTTCCGGCATCTGTTGTGAGACTCACCGGAGC TGGAGATTGCATGGTCGGTGGGACGGTAGCTTCTCTTGTTTCGGGCTTAGATATCGTACAGAGCGTGGGAGTCGGCATTGTGATGGCTAAGGCTGCTATC GAGGCAGAAACTAATGTTCCTTCGGCCATTAGTCTGGCTGATGTTGCAGGTAAATCTGAAACGAATATTTTACTGATTGGACAGTTGCTAATCTCAAAGC ACTGA
AA sequence Show only first row Show all	>Lus10010290 pacid=23169497 polypeptide=Lus10010290 locus=Lus10010290.g ID=Lus10010290.BGIv1.0 annot-version=v1.0 MSQTASPAAERRLDRISRHLCPPPGKQLGRHVLHQAGVSGGQAIYEPVGSEPVVIGGMVLDIHAIPSVSPQPRTTTPGKVNYLLGGVGRNIAECMAKLGT RPYMISAVGIDFAGKLLLENWKSAGLPTEGIRKHQDINTAVISNVFDTDGELAAGVASVDAIEKFLTPAWIQQCQSSIRSAPILVVDANLSPIALEASCK VAAEFNRPVWFEPVSVAKSTRITSIAKYVTFASPNDDELMSMANTLSGGNSFRSVKRNGDYKKDSPKSLFDKLKPAVSVLLDQGIKIVAVTVGEDGLFLC SNDPDFLTFRLQVTETNRIGKWLYNAVTSACPPLPFVLSTKPEGTTSRVFAVHFPAVPASVVRLTGAGDCMVGGTVASLVSGLDIVQSVGVGIVMAKAAI EAETNVPSAISLADVAGKSETNILLIGQLLISKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	1.0	0.9539
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	4.7	0.9253
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	5.7	0.9304
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	5.7	0.9401
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	6.0	0.9265
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	6.5	0.9326
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	6.9	0.9363
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	7.1	0.9430
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	8.1	0.9226
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	8.5	0.9204

Compare expression of checked genes

Lus10010290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.