Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 450 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 361 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 353 / 8e-122 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 332 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 319 / 2e-108 ATSEH soluble epoxide hydrolase (.1) AT2G26750 305 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 283 / 1e-94 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 55 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 52 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1) AT3G09690 45 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009859 [exp] 442 / 1e-158 AT4G02340 349 / 6e-122 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 400 / 2e-140 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 399 / 4e-140 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 380 / 2e-132 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 366 / 5e-127 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 355 / 1e-122 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 349 / 4e-120 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 342 / 2e-117 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 335 / 6e-115 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 471 / 1e-168 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 462 / 2e-165 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 405 / 2e-142 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 403 / 7e-142 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 386 / 8e-135 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 384 / 2e-134 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 365 / 6e-127 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 301 / 1e-101 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 214 / 5e-69 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 199 / 5e-62 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10010293 pacid=23169518 polypeptide=Lus10010293 locus=Lus10010293.g ID=Lus10010293.BGIv1.0 annot-version=v1.0 ATGGATAAGATACAGCACACGACAGTCTCCGCAAACGGGATACAGATCCACGTGGCCTCAATCGGGTCGCTGGGTCAACCCGTCGTCCTCTTTCTCCACG GCTTCCCCGACCTATGGTACACGTGGCGGCACCAGATGCTCTACCTTTCCTCCCTCGGCTACCGCTGCCTAGCTCCCGATCTCCGCGGCTACGGCGACAC CGATTCCCCGCCCGATCCTTCCAGCTACACCGTCTTCCACGTCGTCGGTGACTTGGTCGGGATGCTCGACGCCGTTGGCGTAACCGAGCAGGTGTTCCTC GTCGGCCACGATTGGGGCGCTGTTATGGCTTGGCATTTCTGCTTGTTTCGCCCCGATCGAATTAGGGCCTTGGTGAACATGAGCGTCGCTTTCAACCCTA GGAATCCGATGAGGAAGCCTGTTGATAGCTATAGAGCGTCTCTTGGGGACGATTTCTACATATGCAGGTTTCAGGAACCTGGAGAAGTAGAACAAGATTT TGCAGAGATGGGCACAGCAAAAGTGATAAAGAAGTTCCTCACAATGCGTAGCCCCAAGCCGCCATGTATACCGAAATCAACAGGGTTCCGAACTTTACCA GAGACACCAAATTTGCCACCGTGGCTATCAGAATCCGACATCACTTACTACGCTGCCAAGTTCCAGCTCAGCGGCTTCACCGGAGGACTGAACTACTACC GCTGCATGGACCTCACGTGGGAGCTGATGGCAGCGTTTAGCGGGCTACAAGTGAAAGTTCCGGTCAAGTTCATGGTGGGAGACATGGACATCACTTACAA TTTTCCGGGATCGAAGGATTACTTGGAGAAAGGTGGGATGAAGAAGCTTGTCCCGTTTCTGGAAGAAGTTGTTGTGCTTGAAGGAGTTGCTCATTTCCTA CAGCAGGAGAAGCCCGAGGAAGTCGGCGCTCACATCCACGGTTTTTTCTCCAAGTTCTTGGCGTGA
AA sequence Show only first row Show all	>Lus10010293 pacid=23169518 polypeptide=Lus10010293 locus=Lus10010293.g ID=Lus10010293.BGIv1.0 annot-version=v1.0 MDKIQHTTVSANGIQIHVASIGSLGQPVVLFLHGFPDLWYTWRHQMLYLSSLGYRCLAPDLRGYGDTDSPPDPSSYTVFHVVGDLVGMLDAVGVTEQVFL VGHDWGAVMAWHFCLFRPDRIRALVNMSVAFNPRNPMRKPVDSYRASLGDDFYICRFQEPGEVEQDFAEMGTAKVIKKFLTMRSPKPPCIPKSTGFRTLP ETPNLPPWLSESDITYYAAKFQLSGFTGGLNYYRCMDLTWELMAAFSGLQVKVPVKFMVGDMDITYNFPGSKDYLEKGGMKKLVPFLEEVVVLEGVAHFL QQEKPEEVGAHIHGFFSKFLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	0	1
					Lus10008052 [exp]	1.0	0.9296
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	2.4	0.8908
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	3.0	0.9040
AT1G01840			unknown protein		Lus10036553 [exp]	3.3	0.8781
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	4.7	0.9243
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	6.5	0.8672
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	9.7	0.8923
AT4G25030			unknown protein		Lus10041414 [exp]	11.0	0.8898
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	11.1	0.8981
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	12.6	0.8852

Compare expression of checked genes

Lus10010293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.