Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17730 59 / 9e-10 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G46590 59 / 2e-09 NAC ANAC096 NAC domain containing protein 96 (.1) AT3G04060 52 / 3e-07 NAC ANAC046 NAC domain containing protein 46 (.1) AT2G27300 52 / 5e-07 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT1G71930 49 / 2e-06 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT1G32510 49 / 2e-06 NAC ANAC011 NAC domain containing protein 11 (.1) AT3G10490 49 / 3e-06 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G62380 49 / 3e-06 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT1G79580 49 / 4e-06 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT4G17980 48 / 5e-06 NAC ANAC071 NAC domain containing protein 71 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009858 [exp] 616 / 0 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10031639 [exp] 275 / 1e-87 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10033699 [exp] 233 / 6e-72 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10031595 [exp] 172 / 2e-51 ND / Lus10024006 [exp] 132 / 1e-33 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10025078 [exp] 130 / 5e-33 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10008200 [exp] 99 / 6e-24 ND 43 / 6e-05 Lus10033676 [exp] 101 / 4e-23 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10004531 [exp] 100 / 4e-23 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 92 / 1e-20 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 87 / 3e-18 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.016G027900 [exp] 85 / 4e-18 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 85 / 1e-17 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G163600 [exp] 83 / 3e-17 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028900 [exp] 81 / 7e-17 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G231300 [exp] 82 / 8e-17 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G029200 [exp] 79 / 1e-16 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.019G063000 [exp] 77 / 4e-16 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.017G058100 [exp] 70 / 1e-12 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10010294 pacid=23169484 polypeptide=Lus10010294 locus=Lus10010294.g ID=Lus10010294.BGIv1.0 annot-version=v1.0 ATGGAGAACGGCGCCGATATTTCCGATGCGCCGTCTTTGTTGCCGGCGGGGGCGAAATTCATGCCGACGGCGACGGAATTAGTGGAACACTATCTCTACA ACTACATCCACGGAATCTTCACTCCCACGCAATGCTACCCTGTCCAAGAATCCGACCACTACGGCGAAAATGAGCCCTGGGAGTTATGGAAAGACCACCA AACCAGATCCCACTCCGAAACTAACGATGTATATCTCTTCACCAAACTGAAGAAGAAGGCGGCGACGAATTTCGTTCGGACAATCGGGAACGCCGGCGGG AACTGGCACGGCGAGGTCAAGGAAAAGACGTGCACCCCCGAATTCAGAGGAAGAGTGGACGGATTTATTTGGACTGGGAAGAGGAGGAAGTTCACGTACA GGAATAATCGGGAGGTGGAGAGCGAGAATGGGAAGTGGATACTGTACGAGTACAGAATCGGAAATTTCGACACGGTGGTTTGTACGCTGAGGAATAACGG TTCTCCGGCGGCGGCTGAGGCGGAGAAGAGATTGGTGAACGGAATGAGGAAGAGGAAGTTTGAAGAGATATTGGGTTGTATTGTCCCCGATCGGCGAATA GAATTAATCTCTGTCCCTGCTCGCAAGAAGTTGCAATGTCATCGGGATCAGAGCAATTCCACCGCTATTGTTCCGGCGACTCCGATCTTGGTTGAGAACG AAACGACGTCGTTTGGTGATGCAATTGTTCCCGTTCAGAATGAAACAGCGGCGTGTGAAGGAGCTGGTTATATTGTTCTTGTTCCGTTGATTCCTCCCAC GCGTAATAATCGAGTGCAATCTGGAGTTGAGGAAGGAACGGCGCCGTTTAGAAACGTTTCAAATATGGAGAACTTGATCTTCAGTTTGGAAGAGATATTC GAGGGCATCAGTGAACCAGAGGCAAAACTTTGTGATGTGGATGAAGAAGCACCAAATAATGACTCCTTTACTACATACTGCGACATTGGCGTAATTTTGG ACGATGTTATTGCTACGGAGGCACCTCAAATTACCGATGATCGTCAGGATGCTATACGAACCGGTAAGGATGGAGTGATACCGAGAGACGATGGAGATGA TGTGGAGCTACTGCAATTTGGAGATTTCGAAGAAGTTACAAGGGAGAATATGCTGCTGCAGCAGCAGCAGCAGCAGCGATGGTGTACACCACCACTGCTA CTCGAGGAAAATCGTTACTATACTCCGATAAGCAGTTTGTGGGATTGGGATGATTGCTTACCACTTCCAATTTCCACGTAA
AA sequence Show only first row Show all	>Lus10010294 pacid=23169484 polypeptide=Lus10010294 locus=Lus10010294.g ID=Lus10010294.BGIv1.0 annot-version=v1.0 MENGADISDAPSLLPAGAKFMPTATELVEHYLYNYIHGIFTPTQCYPVQESDHYGENEPWELWKDHQTRSHSETNDVYLFTKLKKKAATNFVRTIGNAGG NWHGEVKEKTCTPEFRGRVDGFIWTGKRRKFTYRNNREVESENGKWILYEYRIGNFDTVVCTLRNNGSPAAAEAEKRLVNGMRKRKFEEILGCIVPDRRI ELISVPARKKLQCHRDQSNSTAIVPATPILVENETTSFGDAIVPVQNETAACEGAGYIVLVPLIPPTRNNRVQSGVEEGTAPFRNVSNMENLIFSLEEIF EGISEPEAKLCDVDEEAPNNDSFTTYCDIGVILDDVIATEAPQITDDRQDAIRTGKDGVIPRDDGDDVELLQFGDFEEVTRENMLLQQQQQQRWCTPPLL LEENRYYTPISSLWDWDDCLPLPIST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46590	NAC	ANAC096	NAC domain containing protein ...		Lus10010294 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10004011 [exp]	6.3	0.7774
AT5G07380			unknown protein		Lus10043018 [exp]	9.5	0.8006
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	14.1	0.7709
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	15.9	0.7714
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	17.8	0.7927
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	19.8	0.7848
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	27.3	0.7735
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	28.8	0.7695
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	29.3	0.7814
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	30.8	0.7234

Compare expression of checked genes

Lus10010294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.