Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02350 473 / 1e-161 SEC15B exocyst complex component sec15B (.1) AT3G56640 301 / 3e-95 SEC15A exocyst complex component sec15A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010439 [exp] 309 / 4e-98 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1) Lus10038993 [exp] 291 / 5e-91 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10027288 [exp] 290 / 1e-90 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10009857 [exp] 176 / 2e-54 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203200 [exp] 594 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 580 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1) Potri.006G034200 [exp] 303 / 7e-96 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1) Potri.016G032100 [exp] 297 / 1e-93 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010295 pacid=23169482 polypeptide=Lus10010295 locus=Lus10010295.g ID=Lus10010295.BGIv1.0 annot-version=v1.0 ATGCTCTCCACAAAGCACCGCCGGAAGGTAGCTCCGGCGAACGGAGACGCTAACGACAACTCCGCCGACAAGCAGGAGCAGCTCCTCCTCTTCGCAGCCA TCTACAACGGCGAGGATCTCGGCCCTTTCATCCGCAAGGTCTTCGCCACAACAGGTAAGCCTGAGATCCTCCTCCACAATCTCCGTCACTTCGTTCGGTC TAAGGAGTCTGAGATCGAGGAAGTCTGCAAGGCTCACTACCAGGATTTCATCCTCGCCGTGGACGACCTCCGATCTCTTCTCTCCGATGTCGATTCCTTG AAATCCGCCCTCTCCGATTCCAATTCTCAGCTCCAGTCCGTGGCCGGACCGCTGCTAACTTCTCTGGACTCCTTCATCGAGGCTCAGACAATCTCTCACA ACGTTTACTTGGCTCTTACTCTGATTGTTTCCTGCACCAAGCTCATGGAGCTTTGCTCTAGAGCGAATCATCATATGTCCAGCGGGAATCTGTATATGGC CTTGAGGTGCGTGGACTCGATCGAGGCCGAGTTCGTGGATAAGGCGCCTTCGTCTACTTTGAAGCGTATGCTGGAGAAGAAGATCCCTCAGATGCGATCG CACGTCGAGAGGAAAGTGAGCAAGGAGTTTGGCGATTGGCTGGTGGAGATCCGTGTGGTGAGTCGGAATTTGGGACAACTGGCGATTGGTCAAGCATCCG CCGCGAGGCAGCGAGAAGAGGATCTGAGAATTAAGCAGAGACAAGCGGAAGAGCAAAGTCGGCTCAATCTAAGAGACTGCGTGTACGCCCTGCAAGAGGA GGAAGAAGAAGACGACGACTACGGGGCCAATGGCGGGATCTCGGATGACGGCAAGAGCGCGTACAGTAATGGCGGTAACAGTCTGTTAGGGTTTGATTTG ACGCCTCTGTACAGAGCTTATCACATTCATCAGACCTTGGGGCTTGAGGACCGATTTAAGCAGTACTACTTCGAGAACAGGAAGCTTCAACTGACTTCAG ACTTCCAGGTATCATCCATGACCCCATTTCTAGAATCACATCAGACGTTTTTCGCTCAAATTGCTGGATTCTTTATCGTTGAGGATAGAGTGTTGAGAAC TGGAGGGGGTTTGATCTCCAGAATGGAAGTTGACAATCTGTGGGAGAATGCTGGGAGAAAGATGTGTTCCGTGTGA
AA sequence Show only first row Show all	>Lus10010295 pacid=23169482 polypeptide=Lus10010295 locus=Lus10010295.g ID=Lus10010295.BGIv1.0 annot-version=v1.0 MLSTKHRRKVAPANGDANDNSADKQEQLLLFAAIYNGEDLGPFIRKVFATTGKPEILLHNLRHFVRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSL KSALSDSNSQLQSVAGPLLTSLDSFIEAQTISHNVYLALTLIVSCTKLMELCSRANHHMSSGNLYMALRCVDSIEAEFVDKAPSSTLKRMLEKKIPQMRS HVERKVSKEFGDWLVEIRVVSRNLGQLAIGQASAARQREEDLRIKQRQAEEQSRLNLRDCVYALQEEEEEDDDYGANGGISDDGKSAYSNGGNSLLGFDL TPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRVLRTGGGLISRMEVDNLWENAGRKMCSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	0	1
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Lus10035269 [exp]	1.7	0.8866
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	3.2	0.8831
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	6.3	0.8492
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	9.2	0.8500
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	11.8	0.8170
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	13.4	0.8642
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	14.1	0.8518
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	16.0	0.8081
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	17.3	0.8600
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	19.4	0.8292

Compare expression of checked genes

Lus10010295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.