Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02350 553 / 0 SEC15B exocyst complex component sec15B (.1) AT3G56640 369 / 6e-122 SEC15A exocyst complex component sec15A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009856 [exp] 660 / 0 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1) Lus10038993 [exp] 387 / 9e-129 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10027288 [exp] 386 / 3e-128 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10010439 [exp] 385 / 4e-128 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203200 [exp] 629 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 621 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1) Potri.016G032100 [exp] 392 / 1e-130 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.006G034200 [exp] 380 / 2e-126 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04091 [flax] [poplar] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Lus10010296 pacid=23169501 polypeptide=Lus10010296 locus=Lus10010296.g ID=Lus10010296.BGIv1.0 annot-version=v1.0 ATGTTGATGAAGAAGGAGTATGAATACTCCATGAATGTGCTCTCTTTCCAGATTCAGACCTCCGATATCGTGCCGGCTTTTCCTTACGTTGCTCCATTTT CGTCAACAGTTCCTGACTGTTGCAGGATTGTACGGTCTTTCATCGAAGACTCTGTGAGTTACATGTCATACGGTGGCCAACTTGATTTCTTCGATGTTGT TAAGAAGTATTTAGATAGGCTTCTGAGTGATGTTCTGGACGGATCACTTTTGAAGCTCATCAACTCGTCAGTCCATGGAGTTTCTCAGGCTATGCAGGTT GCAGCAAACATGACAGTGTTAGAACGAGCCTGCGATTTCTTCTTCCGCCATGCCGCGCAGCTGTCCGGCATTCCGTTGAGAATGGCGGAGAGGAGCAGGA GGCAGTTTCCATTAAACAACGCCAGAGATGCAGCTGAAGAAATGCTATCGGGGTTACTGAAACAAAAGGTGGATGGTTTCATGACATTGATCGAGAACGT GAACTGGATGGCGGACGAACCAGTACCGAGCGGAAATGAATACGTGAACGAAGTCATGATTTATCTCGAAACTCTCGTCTCGACCGCACAACAGATATTA CCAGGCCAAGTCCTTAAAAGGGTGTTGAGAGACGTTCTTGCTCACATTTCCGAGAAGATCGTGGGATCTCTATTTGCAGATTCTGTCAAGAGATTCTCTA TACATGCTGTTATGGGAATCGAGATTGATGTCAAGATATTGGAATCCTTTGCGGATAATCAAGGAGAGGCGAACGACCTGAAATCGGCACTTGGGGAAGC GAGGCAGTTGGTTAATCTACTGCTGAGCAGCCATCCGGAGAACTTTCTGAATCCTGTAATTAGGGAAAGGAGTTACAATTTGTTGGACTATAGGAAAGTA GTCACGATATCGGAGAAGCTGAAAGATCCTTCGGATAGGCTGTTCGGGACGTTTGGAAGCAGGGGAGCTAGGCCGAACCCGAAGAAGAAATCGTTGGATA CTTTGATAAAGAGACTCAAAGACGTGAGCTGA
AA sequence Show only first row Show all	>Lus10010296 pacid=23169501 polypeptide=Lus10010296 locus=Lus10010296.g ID=Lus10010296.BGIv1.0 annot-version=v1.0 MLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSYMSYGGQLDFFDVVKKYLDRLLSDVLDGSLLKLINSSVHGVSQAMQV AANMTVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLNNARDAAEEMLSGLLKQKVDGFMTLIENVNWMADEPVPSGNEYVNEVMIYLETLVSTAQQIL PGQVLKRVLRDVLAHISEKIVGSLFADSVKRFSIHAVMGIEIDVKILESFADNQGEANDLKSALGEARQLVNLLLSSHPENFLNPVIRERSYNLLDYRKV VTISEKLKDPSDRLFGTFGSRGARPNPKKKSLDTLIKRLKDVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010296 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	4.5	0.8981
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	6.9	0.8912
AT3G29170			Eukaryotic protein of unknown ...		Lus10007465 [exp]	13.9	0.8689
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	15.0	0.8755
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	21.3	0.8869
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	22.9	0.8693
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	23.9	0.8892
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	24.0	0.8748
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	24.0	0.8804
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	25.9	0.8699

Compare expression of checked genes

Lus10010296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.