Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) AT4G02370 179 / 5e-58 Protein of unknown function, DUF538 (.1) AT4G02360 137 / 5e-42 Protein of unknown function, DUF538 (.1) AT1G02813 128 / 1e-38 Protein of unknown function, DUF538 (.1) AT5G19590 74 / 3e-17 Protein of unknown function, DUF538 (.1) AT5G19860 70 / 2e-15 Protein of unknown function, DUF538 (.1) AT3G07460 70 / 3e-15 Protein of unknown function, DUF538 (.1.2) AT3G07470 67 / 2e-14 Protein of unknown function, DUF538 (.1) AT5G16380 66 / 7e-14 Protein of unknown function, DUF538 (.1) AT5G37070 62 / 1e-12 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009854 [exp] 324 / 2e-115 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 149 / 2e-46 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10018818 [exp] 99 / 1e-27 AT1G02816 51 / 4e-10 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 85 / 3e-21 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 83 / 1e-20 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 82 / 2e-19 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 77 / 4e-18 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 75 / 1e-16 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 72 / 9e-16 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203400 [exp] 211 / 5e-71 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.014G127600 [exp] 203 / 4e-67 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 184 / 6e-60 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 174 / 2e-56 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 161 / 3e-51 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 85 / 2e-21 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 72 / 4e-16 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 68 / 1e-14 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 53 / 4e-09 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 49 / 1e-07 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10010297 pacid=23169549 polypeptide=Lus10010297 locus=Lus10010297.g ID=Lus10010297.BGIv1.0 annot-version=v1.0 ATGTCTCCGTCGGCGTCGCTTGTTCTCTTTTTCGCCCTCCTCATCGTAAAACCTTTCCCTCCTGCCGCCGCGGAAGCGCTATCGGCGTACGAAGTCCTCG CAGGATACAACTTCCCGATCGGCCTCCTTCCACAGGGAGCAACCGGTTATGAACTGGACCCGTCCACGGGCAGATTCCGCGCTTATCTCAACGGAAGCTG TAGCTTCTCGTTGGAAGGATCGTACCAGCTGAAATACAGCTCCGTAATCGGCGGTTACCTCAGCGAGAATCGGCTCACTAAGCTGACCGGAGTCAGCGTG AAGATACTCTTCCTTTGGCTGAATATCGTCGAGGTGGTCAGGAGTGGCGACGACATCGGTTTCTCCGTAGGGATCGCCTCCGCCAGCTTCCCTATCGAAA ATTTCTACATCTGCCCCAAGTGCGGCTGTGGAATCGTCTGCGGTACTGAGCAAGTGAGCAAGCCGGTGAGGAGATCTTTCGTCTCCTCGATTTAG
AA sequence Show only first row Show all	>Lus10010297 pacid=23169549 polypeptide=Lus10010297 locus=Lus10010297.g ID=Lus10010297.BGIv1.0 annot-version=v1.0 MSPSASLVLFFALLIVKPFPPAAAEALSAYEVLAGYNFPIGLLPQGATGYELDPSTGRFRAYLNGSCSFSLEGSYQLKYSSVIGGYLSENRLTKLTGVSV KILFLWLNIVEVVRSGDDIGFSVGIASASFPIENFYICPKCGCGIVCGTEQVSKPVRRSFVSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	0	1
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	1.4	0.9441
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	3.0	0.9080
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	3.5	0.9213
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	3.5	0.9296
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	3.9	0.9204
AT2G04280			unknown protein		Lus10041091 [exp]	5.7	0.9067
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	6.0	0.9204
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	7.1	0.9073
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	9.5	0.9202
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	9.9	0.9175

Compare expression of checked genes

Lus10010297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.