Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13410 270 / 2e-88 unknown protein AT1G55546 92 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009853 [exp] 543 / 0 AT3G13410 317 / 6e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G000900 [exp] 311 / 1e-104 AT3G13410 290 / 2e-97 unknown protein Potri.003G223601 [exp] 242 / 1e-78 AT3G13410 231 / 4e-75 unknown protein Potri.008G223987 [exp] 112 / 5e-30 AT3G13410 112 / 1e-30 unknown protein Potri.012G124888 [exp] 92 / 7e-23 AT3G13410 96 / 3e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010298 pacid=23169535 polypeptide=Lus10010298 locus=Lus10010298.g ID=Lus10010298.BGIv1.0 annot-version=v1.0 ATGGGAGATCATAGGATCTGGTTTTGGCGAGCAGGGAGAAATCGAGTGAAGAAGAACACCGATCTCATCGTCGTTGATCTCTCACCGGAGAACCCATCTT CGGTACTGTCCGATCGGAATAGGAGAGAAGAAGCAAGCTCCTGCAGGTTACTACACACGCCGTCACCTTCAGGTAAAAAGATGATGAAGGGTGTTGCGAT GTGGCTTACAATAGCAGTTTTCGCAGCTCTTCTTCACGAGCCAATGGCCGTCCCATCACCAACTTCCCCGGCTCTTCTATTTTCTCCTCACTTGCGGTTC TCAAATGCTGAAATGGATGAAGCAGTGACATACCAGACAATTGCGCCAAGGGAACTTGCTAAGGCTGTTCTGTCTCAAGGCGGCTGGTCAAACTTAATGT GCCCTGGGAGAAAAGTTCACCAGCCTGTAGACGTGGCACTTGTCTTTGTTGGTAGAGAGCTTATATCGTCAGACATTTCTTCGAACACTAATACAGACTC TGCCCTGGTGGACTTGCTCAAGGTCGCCTTTACGAAGTCCAATTTTTCTATGGGATTCCCTTACATTGCAGCATCACCAAAGGAGTCGATGGAGAATTCT TTGTTGATGGGTTTCCAAGAAGCTTGTGGAGAGGAGTTACTAACCAGTACAGTTGCATTTTCTGAGTCATGCTCCATTGATGCTGAAAAAAAATTCCAGA AGCTTACAGATATGAAAGCAGTTCATGACCATATTGGTTCAAGGACCGAAAAGAGGGTACATGGACAAACAGACCTTGTTGTTTTCTGTCATGATGGCGT CAGAAAATCGCAGAGTGAAGGCGAAGTATTTTCCGAGCTTATCAATTCCGTGGAGACATCAGGAGCAAAATACTCGGTTCTTTATGTATCGAATCCCTTT CAGTCCATCCAATACCCTTCTCAGCTAGGAAGGCCTCTGAGTGAAGATGCTGCACGAAACAGCTCGCTAAAATCCAGCGGGTGTGATGAATTATGCCAAA TAAAATCATCCCTTCTGGAAGGACTTCTAGTTGCGATCGTTTTGCTGCTGATACTGATATCAGGGCTTTGCTGCATGATGGGAATTGACACGCCAACACG TTTCGAGGCACCCCAAGAGTCTTAA
AA sequence Show only first row Show all	>Lus10010298 pacid=23169535 polypeptide=Lus10010298 locus=Lus10010298.g ID=Lus10010298.BGIv1.0 annot-version=v1.0 MGDHRIWFWRAGRNRVKKNTDLIVVDLSPENPSSVLSDRNRREEASSCRLLHTPSPSGKKMMKGVAMWLTIAVFAALLHEPMAVPSPTSPALLFSPHLRF SNAEMDEAVTYQTIAPRELAKAVLSQGGWSNLMCPGRKVHQPVDVALVFVGRELISSDISSNTNTDSALVDLLKVAFTKSNFSMGFPYIAASPKESMENS LLMGFQEACGEELLTSTVAFSESCSIDAEKKFQKLTDMKAVHDHIGSRTEKRVHGQTDLVVFCHDGVRKSQSEGEVFSELINSVETSGAKYSVLYVSNPF QSIQYPSQLGRPLSEDAARNSSLKSSGCDELCQIKSSLLEGLLVAIVLLLILISGLCCMMGIDTPTRFEAPQES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13410			unknown protein		Lus10010298 [exp]	0	1
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	2.8	0.8613
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	4.5	0.8473
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	6.7	0.8486
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	7.1	0.8610
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	8.5	0.8093
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	13.9	0.8381
AT4G33640			unknown protein		Lus10007087 [exp]	15.5	0.8441
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	16.5	0.8014
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	18.0	0.8071
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	20.4	0.8099

Compare expression of checked genes

Lus10010298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.