Plant FIBer expression Database

Lus10010299 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009852
[exp]
432 / 3e-154 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G001000
[exp]
123 / 1e-33 ND /
PFAM info
Representative CDS sequence
>Lus10010299 pacid=23169513 polypeptide=Lus10010299 locus=Lus10010299.g ID=Lus10010299.BGIv1.0 annot-version=v1.0
ATGAGTACTGTTTCGTTAGGAGCAAGGATGAGGAAAGGGCTGAGGAACTTCTGCCAGGGAGATTCCTCCACTTCCACCGCCCGCCGGAACATCCTCCCAC
CGCTGCTTCACCGTCAGCAACGTCTCTTCCTCGTCAACAATTCCAGCACCGCCGTCAAACTGCTTCCTGATCACGATGATTATGACGAGGGTTCCGATGA
CGACAACGAGGATGAGGGAATATCCTTTTACAACCGTAACGGTCAAACCCACCACCGCCCATCGTCTCCAGTCGGAGCTCCGACCCCAACCTTGGAGGAC
ATGATCAAACAGCTTGAACTAGAGGAGATGGCCGCCGTCGCCGCCAGAAAAACAACAACGATCAACGTCGGCAGCGATAGACAAAGAAGGTCGTGCGTTA
ATACCAGCTCGGATCGGGTACTGAGATCCGCGAGAAACGCCCTGAACCAGTACCCGCCCCGCTTCTCCCTTGACGGCAAGGACTCCATGTACCGCTCCTC
CTTCCTACTCAACGAGAACGACCGCCGCGGCCGCCTGTCGTCGGCCTGCTGCTGCGACGTCGCCGGGAGATCGAGGCGGCTGGCGAGTCTGGTCAACGAG
GGGAATAACAATAATAATAATGCTTATCGGTACGATCAGAAGAATGTGGTGTGGTGTAGGCCCGGAGTTGTGCCGAAGCTGATGGGGCTGGACGCCATTC
CGATTCCGCGTAATAGTTTCTTCGCTGTTTATGATAAGAAAGCTACGGTGGTGTTGAGGAAGAGGAGATATGGCGGCGGCGGCGATGAAGATGTTGAGAG
AGGAATTAGGTCGCCGGAAATTAGGAGACCGGCGAATAGATGA
AA sequence
>Lus10010299 pacid=23169513 polypeptide=Lus10010299 locus=Lus10010299.g ID=Lus10010299.BGIv1.0 annot-version=v1.0
MSTVSLGARMRKGLRNFCQGDSSTSTARRNILPPLLHRQQRLFLVNNSSTAVKLLPDHDDYDEGSDDDNEDEGISFYNRNGQTHHRPSSPVGAPTPTLED
MIKQLELEEMAAVAARKTTTINVGSDRQRRSCVNTSSDRVLRSARNALNQYPPRFSLDGKDSMYRSSFLLNENDRRGRLSSACCCDVAGRSRRLASLVNE
GNNNNNNAYRYDQKNVVWCRPGVVPKLMGLDAIPIPRNSFFAVYDKKATVVLRKRRYGGGGDEDVERGIRSPEIRRPANR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010299
[exp]
0 1
AT2G45970 CYP86A8, LCR LACERATA, "cytochrome P450, fa... Lus10017789
[exp]
3.5 0.8761
AT5G59530 2-oxoglutarate (2OG) and Fe(II... Lus10022196
[exp]
4.5 0.8757
AT1G31420 FEI1 FEI 1, Leucine-rich repeat pro... Lus10034753
[exp]
9.5 0.8365
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Lus10016528
[exp]
13.5 0.8394
AT2G28630 KCS12 3-ketoacyl-CoA synthase 12 (.1... Lus10040873
[exp]
14.5 0.8534
AT5G35570 O-fucosyltransferase family pr... Lus10021557
[exp]
15.4 0.8157
AT1G32780 GroES-like zinc-binding dehydr... Lus10033241
[exp]
18.7 0.8634
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Lus10040796
[exp]
19.0 0.8378
AT1G63460 ATGPX8 glutathione peroxidase 8 (.1) Lus10008534
[exp]
24.4 0.8638
AT2G20875 EPF1 epidermal patterning factor 1 ... Lus10018576
[exp]
24.7 0.8360

Lus10010299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.