Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47500 95 / 2e-22 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009851 [exp] 299 / 2e-95 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201000 [exp] 201 / 2e-59 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 200 / 4e-59 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 101 / 1e-24 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 94 / 4e-22 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010300 pacid=23169505 polypeptide=Lus10010300 locus=Lus10010300.g ID=Lus10010300.BGIv1.0 annot-version=v1.0 ATGGGTGATGTGGGCAACATAGAGGTTCGTGCCAACGTTTTGTCGAGGCAAAGGACGCAAAGTTTTGATCTCGATGAACTACTGACGAATTCGCCCCCAT GGCCTCCGGTCAGTAGTCCTAGCCAAAATTACGGCGAGGATGAGAGAGAAGTCGGGTCTGTTGGATGGGTGGACAAGGTAATGGTGAACAAGCAGGAGGC AGCAAATAGGCTTGAGAGCTCTTTAGGAAGCTGGGAAGCTGATAACGGTCATTTCCCTGAAGCATTTTACCAGAAGTATCTCTCAGATTCCAACGGTAAA GTCCAGTCTCAGCAGTCATACAACATGTTCAGCACGAACAATGCTGCTAGTACGTACGAGCTGGACGATCTCGATGCTGCCACCACCAGCGATTCGTCGG AGCCCGATTTGCTCTGGCAATTCAACCAGTCCAAACTCGGCAGCATTGGGAGCGTGATGGAGTCCAAGAATAAGAGAACGCCACCTTCGAGATCGTCGAA AATTCCGGAGTTGAGGCAGAACATGAGCCCGATGCTTGGTCCTTCTCCATCTCGCAAGCTAGCAAACGGCAATGGCGCTCCGGTGCACCGGAACGGCAGG CAACCGGTCGCAGCTGCTGCCTCCGCGGGGAAACGCAAGCCCGGGAACCGAAAATAG
AA sequence Show only first row Show all	>Lus10010300 pacid=23169505 polypeptide=Lus10010300 locus=Lus10010300.g ID=Lus10010300.BGIv1.0 annot-version=v1.0 MGDVGNIEVRANVLSRQRTQSFDLDELLTNSPPWPPVSSPSQNYGEDEREVGSVGWVDKVMVNKQEAANRLESSLGSWEADNGHFPEAFYQKYLSDSNGK VQSQQSYNMFSTNNAASTYELDDLDAATTSDSSEPDLLWQFNQSKLGSIGSVMESKNKRTPPSRSSKIPELRQNMSPMLGPSPSRKLANGNGAPVHRNGR QPVAAAASAGKRKPGNRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	0	1
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	1.7	0.8919
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	2.2	0.9121
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	3.5	0.8969
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	4.6	0.8730
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	5.3	0.8902
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	7.1	0.8671
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10037464 [exp]	8.0	0.8426
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	8.1	0.8415
AT2G40070			unknown protein		Lus10030402 [exp]	8.4	0.8645
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	10.2	0.8639

Compare expression of checked genes

Lus10010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.