Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47500 408 / 1e-133 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 326 / 2e-102 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 220 / 2e-63 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 160 / 1e-42 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 115 / 3e-27 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 67 / 2e-11 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 56 / 3e-08 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 56 / 5e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 55 / 7e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009851 [exp] 673 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 321 / 2e-100 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 317 / 2e-99 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 308 / 3e-96 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032897 [exp] 170 / 9e-46 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10001306 [exp] 163 / 1e-43 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10042045 [exp] 129 / 8e-32 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 124 / 3e-30 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10031058 [exp] 117 / 6e-28 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201000 [exp] 526 / 3e-179 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 520 / 6e-177 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 391 / 1e-126 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 368 / 5e-118 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 162 / 3e-43 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 159 / 2e-42 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.006G048650 [exp] 136 / 6e-35 AT3G10310 503 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 70 / 1e-12 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 68 / 7e-12 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 58 / 9e-09 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10010302 pacid=23169534 polypeptide=Lus10010302 locus=Lus10010302.g ID=Lus10010302.BGIv1.0 annot-version=v1.0 ATGGCGGGAGAGGGCGGATTATTAATGTCGTTCTCGGTGGCGTCGGTGGTAGAGGATGTACTTCAACAGCACGGGAATAAGCCGAGAGGACTTGATTTGG ATTCCAGACGAGCTGAAGAAGCTGCTTCAAGAAGGTACGAAGCGGCGGGATGGCTGAGAAAGATGATCGGAGTGGTAGCGGCCAAGGATTTACCAGCTGA GCCTTCTGAGGATGAGTTTCGGCTTGGACTCAGGAGTGGAATTATACTCTGCAATGCTCTCAACAAGGTTCAATCCGGAGCTGTCCCCAAGGTGGTGGAG AGCCCGTGTGATGCTGCTCTTATACCAGATGGTGCGGCGTTGTCAGCGTTTCAGTACTTTGAGAATGTGAGGAATTTCCTTGTGGCTGTACAGGAAATGG GGATTCCGACCTTTGAGGCATCCGATCTTGAGCAGGGAGGTAAATCTGCAAGGGTAGTCAACAGTGTTCTGGCACTGAAGTCCTACAGTGAGTGGAAACA ATCAGGAGGAAATGGTGTTTGGAAATTCGGTGGGAATGTGAAGCCTATCATGCCGGCGAAAACTTTTGTGAGAAAGAATTCAGAGCCATTCACCAATTCA TTGTCCAGGAGTATGTCGGTTAATGATAGATGCTTGACCACTGCCTCGACTGATGCTGATCCCAGTAAAATGCAGACTACCGGCTCCTTGAGTATGCTTG TCCGTGCAATTTTGATGGATAAGAAACCTGAAGAAGTTCCTACGGTAAGAGATGCCACATTACTTGCTGCTTTGGTGGAATCAGTCCTCTCAAAGGTGGT TGAGGAGTTTGAGCACCGTATTTCAGGCCATTATGATTTGGCAAAGACTGATTCTAAAGAGACATCAGTTACTCAGACCAAAAATTTCTTCCCCAGATCT GCATCCATTGATAAGAGGGTTGAAACAAAAAACGCCAAAGTATCTAAGAAAGAGGAGAGCTTCGAGAAAAGTCATACCCCTAGTGAAGAAGAAAAGAATA AACTCTTGAAGCAGCAATCGTTGTTTGATCAACAGCAACAAGACATTCAGGATCTGAAGCACACTCTACATGTAACAAAAACTGGTATGCAATTCATGCA AAGGAAGTTTCATGAGGAGTTTAACAATCTTGGTGTGCACATTCACGGACTAGCTCATGCAGCATCTGGTTACCATAAGGTTCTTGAAGATAACCGTAAG CTCTACAATCAGGTGCAAGACCTTAAGGGTGAGTTACGGTTCCCTTGCAAAGCTGAGGCTGGTCATTTGAGGCATTCTTAA
AA sequence Show only first row Show all	>Lus10010302 pacid=23169534 polypeptide=Lus10010302 locus=Lus10010302.g ID=Lus10010302.BGIv1.0 annot-version=v1.0 MAGEGGLLMSFSVASVVEDVLQQHGNKPRGLDLDSRRAEEAASRRYEAAGWLRKMIGVVAAKDLPAEPSEDEFRLGLRSGIILCNALNKVQSGAVPKVVE SPCDAALIPDGAALSAFQYFENVRNFLVAVQEMGIPTFEASDLEQGGKSARVVNSVLALKSYSEWKQSGGNGVWKFGGNVKPIMPAKTFVRKNSEPFTNS LSRSMSVNDRCLTTASTDADPSKMQTTGSLSMLVRAILMDKKPEEVPTVRDATLLAALVESVLSKVVEEFEHRISGHYDLAKTDSKETSVTQTKNFFPRS ASIDKRVETKNAKVSKKEESFEKSHTPSEEEKNKLLKQQSLFDQQQQDIQDLKHTLHVTKTGMQFMQRKFHEEFNNLGVHIHGLAHAASGYHKVLEDNRK LYNQVQDLKGELRFPCKAEAGHLRHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	1.0	0.9531
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10010047 [exp]	3.3	0.8892
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	3.5	0.9170
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	4.2	0.9066
AT2G29620			unknown protein		Lus10009543 [exp]	4.9	0.9179
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	5.7	0.9255
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	6.0	0.8816
AT3G13980			unknown protein		Lus10015641 [exp]	6.7	0.8548
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10040449 [exp]	7.0	0.8973
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	7.4	0.9160

Compare expression of checked genes

Lus10010302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.