Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15100 374 / 5e-129 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 267 / 3e-87 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G57090 199 / 3e-58 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT2G01420 197 / 1e-57 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 189 / 1e-54 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G77110 186 / 9e-54 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT1G70940 186 / 2e-53 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G73590 184 / 8e-53 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013422 [exp] 633 / 0 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 271 / 1e-88 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 261 / 7e-85 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 201 / 6e-64 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 198 / 1e-62 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 192 / 1e-60 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 196 / 6e-59 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 199 / 2e-58 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 189 / 3e-54 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124200 [exp] 428 / 2e-150 AT5G15100 378 / 2e-130 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.017G078300 [exp] 427 / 4e-150 AT5G15100 358 / 5e-123 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.019G052800 [exp] 271 / 4e-89 AT5G16530 471 / 7e-168 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.013G087000 [exp] 262 / 2e-85 AT5G16530 513 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 210 / 1e-62 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 207 / 2e-61 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 200 / 2e-58 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 199 / 2e-58 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 198 / 6e-58 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 194 / 9e-58 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10010303 pacid=23169516 polypeptide=Lus10010303 locus=Lus10010303.g ID=Lus10010303.BGIv1.0 annot-version=v1.0 ATGATTTCATCAAGTGACATATACCATGTGGTGGCAGCCACAATCCCACTGTACGTCGCCATGATCCTAGCCTACATTTCAGTCAAATGCTGCAAACTCT TCACTCCAGAGCAATGTTCTGGAATCAACAAGTTCGTTTCCAAATTTTCAATCCCTCTCTTGTCATTCCAAATCATCTCCACCAACAACCCTTACCAAAT GAACCTCAAGCTCATACTGTCAGACTTTTTGCAAAAACTGCTTGCAATTCTGCTGCTCGGTTTGGCCTCCAGGGTTTGGTTCCGGAGTTGGTCGAGGCTT GATTCTGTCATAATAACCGGTTTGTCCCTCTCGACGCTGCCTAACACTTTGATCCTCGGGATCCCACTCCTGCGAGCCATGTATGGAGGCGAATCCGCTG AGTTGCTGCTTTCACAGATCGTGTTCTTGCAGAGTGTGGTTTGGTACAATCTGCTGCTGTTTCTATTCGAGTTACATTCCGCGAGGAGGTTGGTTTCGAC TACCGGCAGCCGAAACCTGCCTCATCCAGTGGAAACCGCAGAAGGCGATCGATTGAAGGACGAAGGGCATGAAGAGGAAGCAAAAGAAGTGAAGACGTTG AGCATTCTGATTATAGTAGGAAAGAAGCTGATGAGGAATCCTAACTTCTATGCTACGTTGATTGGGTTCATTTGGGCATGCATTCATTTCAGGTGGGGAG TAAGACTGCCAGACATCATTGATAAATCCATTATGATATTAGCAACAGGAGGGCTTGGCATGGCAATGTTCAGCTTAGGTCTGTTCATGGCATCAAGGGG AAGTATAATAGCATGCGGGGTTAAGATGGCAGGGGCGGCAATGGTGATGAAGTTCGTCGCAGGGCCGGCTTTAATGGCGATATCTTCTGTGGCTGTGGGA TTGAGAGGCACAGTGCTTAGAGTTGCTATCGTTCAGGCTGCTCTGCCTCAAGGGATAGTTCCATTTGTGTTTGCAAAAGAGTACAACGTGCATCCAGACA TTTTGAGCACAGCTGTTATCTTTGGGATGTTCGTTGCCCTGCCAATAGCTCTCGCCTATTACTCACTGCTAGCACTCTGA
AA sequence Show only first row Show all	>Lus10010303 pacid=23169516 polypeptide=Lus10010303 locus=Lus10010303.g ID=Lus10010303.BGIv1.0 annot-version=v1.0 MISSSDIYHVVAATIPLYVAMILAYISVKCCKLFTPEQCSGINKFVSKFSIPLLSFQIISTNNPYQMNLKLILSDFLQKLLAILLLGLASRVWFRSWSRL DSVIITGLSLSTLPNTLILGIPLLRAMYGGESAELLLSQIVFLQSVVWYNLLLFLFELHSARRLVSTTGSRNLPHPVETAEGDRLKDEGHEEEAKEVKTL SILIIVGKKLMRNPNFYATLIGFIWACIHFRWGVRLPDIIDKSIMILATGGLGMAMFSLGLFMASRGSIIACGVKMAGAAMVMKFVAGPALMAISSVAVG LRGTVLRVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMFVALPIALAYYSLLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10010303 [exp]	0	1
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	3.3	0.8908
AT1G11915			unknown protein		Lus10023362 [exp]	5.8	0.8594
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	11.2	0.8338
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	11.8	0.8251
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	12.8	0.8302
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	15.7	0.8190
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	16.2	0.8250
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	17.7	0.7962
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	19.0	0.8115
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	19.4	0.7878

Compare expression of checked genes

Lus10010303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.