Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 364 / 3e-123 unknown protein AT2G24960 219 / 3e-64 unknown protein AT5G05800 96 / 2e-21 unknown protein AT4G02550 69 / 8e-13 unknown protein AT3G11290 66 / 2e-11 unknown protein AT3G11310 64 / 7e-11 unknown protein AT2G19220 50 / 2e-06 unknown protein AT1G30140 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013421 [exp] 679 / 0 AT4G02210 418 / 1e-144 unknown protein Lus10026250 [exp] 201 / 1e-57 AT2G24960 750 / 0.0 unknown protein Lus10042421 [exp] 97 / 2e-24 AT2G24960 92 / 1e-22 unknown protein Lus10025958 [exp] 77 / 2e-15 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 77 / 4e-15 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016838 [exp] 63 / 3e-11 AT2G24960 71 / 4e-14 unknown protein Lus10024329 [exp] 64 / 6e-11 AT5G05800 81 / 7e-17 unknown protein Lus10002039 [exp] 62 / 1e-10 AT3G11290 91 / 2e-20 unknown protein Lus10008312 [exp] 53 / 7e-08 AT4G02210 53 / 4e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200600 [exp] 387 / 2e-131 AT4G02210 471 / 1e-163 unknown protein Potri.006G265900 [exp] 253 / 9e-77 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 170 / 4e-46 AT2G24960 514 / 2e-168 unknown protein Potri.004G172900 [exp] 88 / 3e-19 AT2G24960 96 / 1e-21 unknown protein Potri.003G190900 [exp] 70 / 5e-13 AT4G02550 407 / 8e-144 unknown protein Potri.006G191850 [exp] 62 / 2e-11 AT4G02550 71 / 2e-15 unknown protein Potri.011G163248 [exp] 64 / 4e-11 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 62 / 9e-11 AT4G02550 77 / 7e-16 unknown protein Potri.002G023800 [exp] 62 / 2e-10 AT2G24960 89 / 2e-19 unknown protein Potri.005G252500 [exp] 59 / 2e-09 AT4G02210 74 / 9e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010304 pacid=23169510 polypeptide=Lus10010304 locus=Lus10010304.g ID=Lus10010304.BGIv1.0 annot-version=v1.0 ATGGCAACCCGCGGCGGAGGCGATCATCAGCGGACGGTGTGGACGCCGGAGACGGACAGATACTTCATCGATCTCCTGCTGGATCAAATGAAAGGAGGGA ACAAGTTCGACGACCATCTCTTCAGCAAGCGAGCATGGAAGCAGATGACGGAACTGTTCAACGCCAAGTTCAAGTTCCAGTACGACAAGGACGTCCTCAA GAACCGCCACAAGACGCTCCGGAACCTGTACAGGGCCGTCCGGCGGCTACTCGACTGCGATGGATTCAGCTGGGACGACAGCCGGCTGATGGTCACCGCC GATAACCGCATTCGGGGACAACAACTGAAGGAAAGCGCCGCTCAGGATATGAAGACCGCGGCGGAGTCCGGCGGTGGCGGTGAAGAGATTCCAATTGTGT TAGTGGCGGCGGCGGCGGTGGGCAACAGAGTGAGGACGTATTGGCAGCCGCCGATGGACCGTTACTTCATCGATCTGATGATGGAGCAAGTACAGAAGGG GAATCAGATCGACGGAGCTTTCAGGAAACAATCATGGGCGGAAATGATTGCGGATTTCAATTCCAAGTTTGGCTTTGGCTACGACGTTGATGTTCTGAAG AATCGGTACAAGACGATGAAAAGGCAATACAACGCGATCAAGAGCCTGCTTGAGCTGAATGGATTCACTTGGGATGATCACCGTCAAATGATCACCGCCG ATGATTCCGTCTGGCAAGACTACATCAAAGTAACACACATACATACACTTCGAATTTTCAACTTCGCTTTCGAGTCGCATTTGCTTAACTGGATTTGTAT ACAATCATTGGAGACTCATACTGATGCGAGGCAATACATGACAAGGCCAGTACCGTACTACAAAGATATATGCACAATATGCAGAGGAGACGAATACAAT CACGAAGAGCCTGCAACATCGGCCGAAACTAAAGACTTCGGCGGTGCATCAAACGCCATGGTTTCCGAAATCGGAAACAAACGTCGATTAGAAGGGCAGG AGGAGGTTCGTTACCCTAAGAAGCATACACCTGCTGCTGTCGCTGCGACGGTTTCGAGCTCGCAGCAGCCTATCTCGATAGAGCGGGTGGTAGAGGCCAT CCAGGCTCTGCCGGAAATGGAGGAGGATCTAATATTAGATGCGTGTGATCTGTTAGAGGACGATTTCAAAGCCAAGACATTCATAGCTTTGGATGTGAAA CTGAGAAAGAAATGGTTGTTGAGGAAACTACGTCCTTGA
AA sequence Show only first row Show all	>Lus10010304 pacid=23169510 polypeptide=Lus10010304 locus=Lus10010304.g ID=Lus10010304.BGIv1.0 annot-version=v1.0 MATRGGGDHQRTVWTPETDRYFIDLLLDQMKGGNKFDDHLFSKRAWKQMTELFNAKFKFQYDKDVLKNRHKTLRNLYRAVRRLLDCDGFSWDDSRLMVTA DNRIRGQQLKESAAQDMKTAAESGGGGEEIPIVLVAAAAVGNRVRTYWQPPMDRYFIDLMMEQVQKGNQIDGAFRKQSWAEMIADFNSKFGFGYDVDVLK NRYKTMKRQYNAIKSLLELNGFTWDDHRQMITADDSVWQDYIKVTHIHTLRIFNFAFESHLLNWICIQSLETHTDARQYMTRPVPYYKDICTICRGDEYN HEEPATSAETKDFGGASNAMVSEIGNKRRLEGQEEVRYPKKHTPAAVAATVSSSQQPISIERVVEAIQALPEMEEDLILDACDLLEDDFKAKTFIALDVK LRKKWLLRKLRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10010304 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	4.8	0.6732
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	16.9	0.6308
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	17.1	0.6139
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	29.6	0.6027
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	36.9	0.5892
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	40.7	0.5616
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10033481 [exp]	42.7	0.5869
AT5G13470			unknown protein		Lus10005318 [exp]	44.8	0.5882
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	50.6	0.5914
					Lus10042733 [exp]	52.7	0.5710

Compare expression of checked genes

Lus10010304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.