Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49230 108 / 4e-29 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT3G06760 108 / 7e-29 Drought-responsive family protein (.1.2) AT4G02200 105 / 5e-28 Drought-responsive family protein (.1.2.3) AT3G05700 102 / 9e-27 Drought-responsive family protein (.1) AT5G26990 100 / 4e-26 Drought-responsive family protein (.1) AT1G02750 89 / 1e-21 Drought-responsive family protein (.1.2) AT1G56280 85 / 2e-20 ATDI19 drought-induced 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013420 [exp] 364 / 1e-129 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10001462 [exp] 230 / 2e-76 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10031467 [exp] 134 / 1e-38 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10002441 [exp] 114 / 1e-32 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10015214 [exp] 102 / 7e-27 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10037819 [exp] 102 / 1e-26 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10017097 [exp] 79 / 7e-18 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10037717 [exp] 70 / 1e-13 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10015412 [exp] 66 / 6e-13 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200500 [exp] 149 / 6e-45 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1) Potri.013G011200 [exp] 134 / 6e-39 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.014G125500 [exp] 133 / 1e-38 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.010G000800 [exp] 131 / 5e-38 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.005G020900 [exp] 128 / 9e-37 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.008G213400 [exp] 118 / 7e-33 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.011G057200 [exp] 69 / 5e-14 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.019G027300 [exp] 64 / 2e-13 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.012G086500 [exp] 50 / 2e-07 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10010305 pacid=23169483 polypeptide=Lus10010305 locus=Lus10010305.g ID=Lus10010305.BGIv1.0 annot-version=v1.0 ATGGAAGATGATAAGTGGAGCATCGGCCGCCTGTCTAGTGCTTCTTCTAGGTCTTATCAGCAGCAGGATCAATTATCAGATCTTTGCATTGATTTTGAAG AAGACGCGGAAGATTACCTAATGGCGGATTATCCGTGCCCATATTGCGAAGACGATTTCGATTTGGTTGAACTGTGCTGTCACATAGACGATGAGCATCC GTTCGAACCAAGCTCGGAGATATCTATGGACATGGTTGGGCACATTACATCGGAGCATGGAGACATGTTCAAGATATCCTTCCCACCTGCTCACAGTTTA CAGAAGTTGAAACGCCGGAAAGGGGATTCACGGTCACCACTCTCTTCTCTGAAGAAAGAAGCAGCGGAGGACTATTGGTCGTCTCTTTTTTCTCGGTCTT CTGGTCCAGCATTTCCCTCTGCTAGTGACCCGTTACTGTCCTTCATACAAAACATGCCCTCTGTGGACAAAGCTGAAAGCTCTGTGCCACTTCTGGAAAC TCAAATAGAAGCTGCAAATGAGCAATCCGAAGATAAACAACGATCTGTCAGTGCTGTTACTTCCCCTCCATTATCAGACAAAGAGCTGACGGAGAAGACC AATAAGAGTCGGTTCGTGCAGGGTCTGCTGTTGTCCACCATGTTCAATGATGACTTATGA
AA sequence Show only first row Show all	>Lus10010305 pacid=23169483 polypeptide=Lus10010305 locus=Lus10010305.g ID=Lus10010305.BGIv1.0 annot-version=v1.0 MEDDKWSIGRLSSASSRSYQQQDQLSDLCIDFEEDAEDYLMADYPCPYCEDDFDLVELCCHIDDEHPFEPSSEISMDMVGHITSEHGDMFKISFPPAHSL QKLKRRKGDSRSPLSSLKKEAAEDYWSSLFSRSSGPAFPSASDPLLSFIQNMPSVDKAESSVPLLETQIEAANEQSEDKQRSVSAVTSPPLSDKELTEKT NKSRFVQGLLLSTMFNDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06760			Drought-responsive family prot...		Lus10010305 [exp]	0	1
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	5.9	0.9082
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	8.7	0.8983
AT3G03560			unknown protein		Lus10020297 [exp]	9.5	0.8798
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	17.9	0.8898
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	21.8	0.9016
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	23.5	0.8793
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	23.9	0.9021
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10012803 [exp]	24.0	0.8626
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	25.0	0.8984
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	29.9	0.8819

Compare expression of checked genes

Lus10010305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.