Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013419 [exp] 123 / 2e-35 AT4G02270 118 / 3e-33 root hair specific 13 (.1) Lus10005539 [exp] 54 / 4e-09 AT4G02270 103 / 1e-27 root hair specific 13 (.1) Lus10041926 [exp] 52 / 2e-08 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10008213 [exp] 43 / 2e-05 AT2G47540 127 / 2e-36 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201800 [exp] 49 / 2e-07 AT4G02270 118 / 1e-33 root hair specific 13 (.1) Potri.002G201900 [exp] 41 / 8e-05 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010306 pacid=23169495 polypeptide=Lus10010306 locus=Lus10010306.g ID=Lus10010306.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTCCATTTCGCCCCCGCAGCATATGCCCTTCTGTTGTCCCTATCACTCGTCGGATCCATCGCCGGCGGCCAGAACTACCAACGCCCCGGCA GCGCCACCCTCCAGAAGCCCAGTACTACCAGGCCTGAGCCCGTCAACTCACAACCCAATATTGGGTACGGCCCGAAGAGATCAGAAGAAGACGCATATCC TATTGCAGTTGAAGGAACCGTCGTTTGCAAATCCGGCTCCGAATATGTTCCTATTAAAGCGATCTCCGATGAGGGATTGCAGCGTGGCGAGCGATGTGAG CAAAGGGATCACGGATCGCTGCTGTCTTCGTATCGCATCCTCCACGAAGAGCGCAACAAGCTGTACCCGGTGGGTCCTTTCTTGTACACCCAGTCGCCTA AGAGTACTCCTGCTGGGTACAGATAA
AA sequence Show only first row Show all	>Lus10010306 pacid=23169495 polypeptide=Lus10010306 locus=Lus10010306.g ID=Lus10010306.BGIv1.0 annot-version=v1.0 MASVHFAPAAYALLLSLSLVGSIAGGQNYQRPGSATLQKPSTTRPEPVNSQPNIGYGPKRSEEDAYPIAVEGTVVCKSGSEYVPIKAISDEGLQRGERCE QRDHGSLLSSYRILHEERNKLYPVGPFLYTQSPKSTPAGYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010306 [exp]	0	1
					Lus10015230 [exp]	1.0	0.9705
AT1G64870			unknown protein		Lus10041678 [exp]	2.4	0.9524
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	3.5	0.9320
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	4.2	0.9460
					Lus10002237 [exp]	5.9	0.9277
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	10.2	0.8660
AT3G14880			unknown protein		Lus10013746 [exp]	10.7	0.8102
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	11.0	0.9024
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	11.8	0.9024
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	12.6	0.9024

Compare expression of checked genes

Lus10010306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.