Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02290 490 / 4e-170 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 477 / 2e-165 ATCEL2 cellulase 2 (.1) AT1G70710 385 / 2e-129 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G71380 383 / 8e-129 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G23210 375 / 9e-126 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G39010 345 / 9e-114 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT1G22880 337 / 1e-110 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G39000 315 / 3e-102 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G11050 308 / 6e-98 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 304 / 1e-97 ATGH9B8 glycosyl hydrolase 9B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013418 [exp] 627 / 0 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10008208 [exp] 544 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 442 / 2e-151 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10002930 [exp] 421 / 2e-143 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10025880 [exp] 380 / 5e-128 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10029071 [exp] 369 / 3e-123 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 359 / 4e-119 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10018077 [exp] 342 / 2e-112 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 340 / 2e-111 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202400 [exp] 536 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 530 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.010G109200 [exp] 461 / 5e-159 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G083200 [exp] 391 / 8e-132 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.008G132700 [exp] 371 / 6e-124 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 369 / 5e-123 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.004G162200 [exp] 369 / 6e-123 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.019G069300 [exp] 346 / 3e-114 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.015G127900 [exp] 338 / 8e-111 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 325 / 4e-106 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10010307 pacid=23169500 polypeptide=Lus10010307 locus=Lus10010307.g ID=Lus10010307.BGIv1.0 annot-version=v1.0 ATGAAACAAAAGCAGGCAAGAGAACATGGTAAAGGAATATGGGTCTTAATAATTACCTGTACTAACCCAAAAGGGCCACCCAAAGGCCAAACCCTTCACT CTACAAGCTCTACTACAACGTCTTCTTCCTTCTTCCTCTATAAATACTCTGCAACTGACATTTCTTCTCACCGCCGCCTGCTTCAACAGTTTGCAGTCCC CTTTGGCAAGAAGAAAATGGCAACTTCTTCTTCTTTCACTCTCCTGCTTCTCCTTCTCACTCTCCTTCCCAACTCCCATGGCGCCCATTATAACCACCGC AGCCACCCTCGCACAGCAAGCCACAACTACAGAGACGCACTAACCAAATCAATCCTCTTCTTCGAAGGCCAGAGGTCCGGGAAGCTCCCTTCTAGCCAGA GGCTTTCTTGGAGGAGAGACTCTGGCCTCTCCGACGGATCCGCCATGAATGTGGATTTGGTGGGAGGGTATTATGATGCAGGGGACAATGTGAAGTTCGG GTTCCCAATGGCTTTCACAACTACAATGCTGTCATGGAGTGTGATTGAGTTTGGCGGGTTGATGAAAGGTGAGCTTTCAAATGCTAGAGAAGCTATCCGG TGGGCTACGGATTACCTTCTCAAAGCCACTGCACATCCAGACACCATCTATGTTCAGGTTGGTGATGCGAGAAAGGACCATGCTTGTTGGGAGAGACCAG AGGACATGGACACTCCTAGAAGTGTGTTCAAAGTAGACAAGAACTCACCTGGTTCCGATGTTGCCGGCGAAACCGCTGCTGCACTTGCTGCTGCTTCTTT GGTTTTCAGGAGGTGTGACCCTTCTTACTCCAGGCTCCTGCTCAAAAGGGCCATCACGGTGTTCCAATTTGCTGATAAGTACAGAGGACCTTACAGCAAA GGGCTGAAACGCTTTGTCTGCCCTTTCTACTGCTCCTACTCCGGATACCAGGATGAGTTGTTGTGGGGAGCAGCCTGGTTGCACAGGGCAACCAGAAACC CAACATACCTCAGCTACATCCAAATCAACGGCCAGATCCTCGGAGCTGCCGAATTTGACAACACATTCGGGTGGGACAACAAGCACGTCGGAGCCAGAAT CCTACTCTCGAAAGCATTCCTTGTTCAAGGAGTTCAGACTCTCCATGACTACAAGAGCCACGCTGATTGGCAGGTGGACTACCTGCTGGGAGACAATCCG CTGAGGATGTCATACATGGTGGGTTACGGTCCGCGGTACCCGGCGAGGATCCACCACAGGGGATCGTCGCTGCCGTCGACGTCGTCGCATCCGGCGAAGA TCCAGTGCACGGCCGGGTTCAGTGTGATGAAGTCGCAGTCCCCGAACCCTAACGTGCTAGTCGGAGCGGTGGTCGGAGGTCCAGACGGCCGCGACCGTTT CCCTGACCAAAGATCCGATTACGAGCAGTCGGAGCCGTGCACGTACATCAACGCGCCGCTCGTCGGGTCGCTGGCTTATCTGGCTCACTCATTCGGCCAG CTGTAG
AA sequence Show only first row Show all	>Lus10010307 pacid=23169500 polypeptide=Lus10010307 locus=Lus10010307.g ID=Lus10010307.BGIv1.0 annot-version=v1.0 MKQKQAREHGKGIWVLIITCTNPKGPPKGQTLHSTSSTTTSSSFFLYKYSATDISSHRRLLQQFAVPFGKKKMATSSSFTLLLLLLTLLPNSHGAHYNHR SHPRTASHNYRDALTKSILFFEGQRSGKLPSSQRLSWRRDSGLSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELSNAREAIR WATDYLLKATAHPDTIYVQVGDARKDHACWERPEDMDTPRSVFKVDKNSPGSDVAGETAAALAAASLVFRRCDPSYSRLLLKRAITVFQFADKYRGPYSK GLKRFVCPFYCSYSGYQDELLWGAAWLHRATRNPTYLSYIQINGQILGAAEFDNTFGWDNKHVGARILLSKAFLVQGVQTLHDYKSHADWQVDYLLGDNP LRMSYMVGYGPRYPARIHHRGSSLPSTSSHPAKIQCTAGFSVMKSQSPNPNVLVGAVVGGPDGRDRFPDQRSDYEQSEPCTYINAPLVGSLAYLAHSFGQ L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	1.7	0.9063
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	2.6	0.9074
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	3.5	0.8940
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	5.3	0.9065
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	7.5	0.8688
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	7.7	0.8527
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	8.1	0.8957
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	8.9	0.8339
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	8.9	0.9036
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	9.2	0.8905

Compare expression of checked genes

Lus10010307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.