Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02280 1318 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 1189 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 1080 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 1050 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G73370 874 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 851 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT5G20280 100 / 2e-21 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT1G04920 100 / 2e-21 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G11110 92 / 6e-19 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT4G10120 79 / 1e-14 ATSPS4F Sucrose-phosphate synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001468 [exp] 1359 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 1086 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 1048 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10007372 [exp] 853 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 849 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 835 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 771 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10013417 [exp] 739 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 518 / 1e-179 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202300 [exp] 1367 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G136700 [exp] 1105 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 1093 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.015G029100 [exp] 916 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 905 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 888 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 881 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.018G025100 [exp] 104 / 1e-22 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 104 / 1e-22 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 103 / 2e-22 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10010308 pacid=23169545 polypeptide=Lus10010308 locus=Lus10010308.g ID=Lus10010308.BGIv1.0 annot-version=v1.0 ATGGCGAACCCTAAGCTAGGGCGGAATCTCAGCATCAGGGATCGCGTCGAGGACACTCTCTCTGCTCACCGCAACCAGCTCGTTTCCCTCCTTTCCAGGT ACGTGGAGCAAGGAAAAGGAATTCTGCAGCCGCATAACTTGCTAGATGAGCTCGACAACGTCATCTGCGACGAACAAGATAGGGAGACGCTTCGTAATGG CCCTTTCAGTGAAGTCATTAAATCTGCTATGGAAGCGATAGTTCTGCCTCCATTTGTGGCAATTGCCGTTCGTCCAAGGCCTGGTGTTTGGGAATACGTG CGGGTTAATGTTCATGAGCTCAGTGTGGATCAATTGACTATCTCTGAGTACCTTCAGTTCAAGGAAGAATTGGTGGACGGGCAGTCAAATGATCCGTATG TTCTTGAGCTGGATTTGGGGGCGTTCAATGCTAGTTTCCCTCGACCTAACCGTTCTTCATCGATTGGAAATGGAGTTCAGTTCCTCAACCGTCATCTCTC TTCAAACATGTTCCGCAATAAGGACTCGTTAGAGCCTCTGCTTGAATTCCTGCGGGCACACAAGTATAAAGGGCATGCTTTAATGTTGAATGATAGGATA CAAAGTGTATCAAGACTGCAATCTGCTCTAGCTAAGGCAGAAGAGTACATCTCCAAGCTTCCACCTGACACTCCATACCCTGAATTTGAATATGCGATAC AAGGCATGGGCTTCGAGCGAGGCTGGGGTGACACTGCAGAACGAACTATGGAGATGATGCATCTTCTCTTAGACATCTTGCAAGCTCCTGATCCTTCAAC TTTAGAGACATTCCTGGGACGAGTACCTATGGTATTCAACGTTGTTATCTTGTCTCCGCACGGATACTTTGGGCAGGCAAATGTTTTAGGCTTGCCAGAC ACTGGTGGTCAGATTGTGTATATACTGGATCAAGTGCGTGCTTTGGAGCATGAAATGCTTCTTAGGATAAAGAAGCAAGGATTGGATTTCAAGCCAAGAA TTCTCGTTGTGACCAGGTTAATACCTGATGCAAAAGGTACTACGTGCAATCAGCGTTTGGAAAGAATCAGTGGAACAGAGTATACTCATATTCTCAGAGT ACCCTTCAGATCAGAGAATGGAATTCTTCGTAAATGGATCTCCAGGTTTGACGTGTGGCCGTACCTGGAGACCTTTGCTGAGGATGTGGCCAGTGAAATT GTCGCCGAGTTACAGGCAATTCCAGATTTCATCATTGGTAACTACAGTGACGGAAATCTTGTTGCGTCTTTGTTGGCTTACAAAATGGGTGTTACACAGT GCACCATCGCCCATGCATTGGAGAAAACAAAATATCCAAATTCAGATCTCTACTGGAAGAAGTTTGATGAGAAATATCACTTCTCTTGTCAATTCACTGC TGATCTTTTAGCCATGAATAATGCAGACTTCATTATTACCAGTACTTACCAAGAGATTGCAGGAACGAAAACTACTGTGGGACAGTATGAAAGTCACACG GCCTTCACCCTTCCCGGACTCTACAGAGTTGTTCATGGTATTGATGTCTTTGATCCGAAGTTCAACATTGTATCTCCTGGAGCTGATATGTCGATCTACT TCCCGTTCTACGAGAAGCAGAAAAGACTCACATCTCTGCATGCCTCGCTCGAGAAGATGTTGTATGATCCGGAGCAAACTGATGAGTGGATCAAGTCGAA AGACAGGGAAGAGATTGATGAAATCGAAAAGATGCATAGTCTTATGAAGGAGTACGGCTTGAACGGACAGTTCCGTTGGATCACATCACAAACAAATCGA GCTAGAAATGGCGAGCTCTACCGCTACATAGCAGACACAAGAGGAGCTTTTGTACAGCCTGCTTTTTACGAGGCTTTTGGACTCACAGTTGTGGAGGCAA TGACCTGTGGCCTTCCAACTTTCGCCACTCTCCACGGCGGTCCTGCCGAGATTATTGAGCATGGAGTTTCCGGCTTCCATATCGATCCGTATCACCCTGA TCAGACTGCTGCACAAATTGCGGATTTCTTTGAACGCTGCAAAGAAGATCCTAGCTACTGGAACAAAATCTCGGACGGAGGACTCCAACGAATTTATGCC AGGTATACATGGAAGATCTATTCAGAAAGGCTAATGACATTGGCTGGGGTATACGGTTTCTGGAAGCACGTCTCGAAACTGGAACGCCGCGAGACCCGAC GATACCTCGAGATGTTCTACATCCTCAAGTTCCGCGACCTGACAAAGACTGTTCCTTTGGCGATTGACGACCATCATTAA
AA sequence Show only first row Show all	>Lus10010308 pacid=23169545 polypeptide=Lus10010308 locus=Lus10010308.g ID=Lus10010308.BGIv1.0 annot-version=v1.0 MANPKLGRNLSIRDRVEDTLSAHRNQLVSLLSRYVEQGKGILQPHNLLDELDNVICDEQDRETLRNGPFSEVIKSAMEAIVLPPFVAIAVRPRPGVWEYV RVNVHELSVDQLTISEYLQFKEELVDGQSNDPYVLELDLGAFNASFPRPNRSSSIGNGVQFLNRHLSSNMFRNKDSLEPLLEFLRAHKYKGHALMLNDRI QSVSRLQSALAKAEEYISKLPPDTPYPEFEYAIQGMGFERGWGDTAERTMEMMHLLLDILQAPDPSTLETFLGRVPMVFNVVILSPHGYFGQANVLGLPD TGGQIVYILDQVRALEHEMLLRIKKQGLDFKPRILVVTRLIPDAKGTTCNQRLERISGTEYTHILRVPFRSENGILRKWISRFDVWPYLETFAEDVASEI VAELQAIPDFIIGNYSDGNLVASLLAYKMGVTQCTIAHALEKTKYPNSDLYWKKFDEKYHFSCQFTADLLAMNNADFIITSTYQEIAGTKTTVGQYESHT AFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPFYEKQKRLTSLHASLEKMLYDPEQTDEWIKSKDREEIDEIEKMHSLMKEYGLNGQFRWITSQTNR ARNGELYRYIADTRGAFVQPAFYEAFGLTVVEAMTCGLPTFATLHGGPAEIIEHGVSGFHIDPYHPDQTAAQIADFFERCKEDPSYWNKISDGGLQRIYA RYTWKIYSERLMTLAGVYGFWKHVSKLERRETRRYLEMFYILKFRDLTKTVPLAIDDHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	0	1
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	1.4	0.9104
					Lus10039778 [exp]	3.2	0.8982
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	8.0	0.8799
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	9.2	0.8794
AT1G17860			Kunitz family trypsin and prot...		Lus10007888 [exp]	11.3	0.9094
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	11.5	0.8947
AT1G49310			unknown protein		Lus10040476 [exp]	13.5	0.9017
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	21.7	0.8583
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	22.4	0.8449
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	24.9	0.8524

Compare expression of checked genes

Lus10010308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.